G4258


Basic Information

Item Value
gene id G4258
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 16607919 ~ 16608375 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU5770
AGAGGGGTCAAGATTGACCCTAAGAGATGAaaaaggggaaagaaagaggacAGCGTGACagaaagcaaaagagaaagagagagagaaagaggcaggaAAATTGACAGAAATAAGACTGCAGCaaggagaaaaataatataGTGCACCCAACTTCAGCCAGGACTAAGGAAGAAAGGGATATGTGAGGATTTGTGGGTTAGAAGCTGTTGGTTAGAGTTAGTGCAGGTGGTGTTAATGCAGAGTAAGCTCTCTAAAGTGATGGTCGACTAAAGAACTTTCCTAGCTGTGAGTGATCTCTGTCTACCGAGAGTGATCTCTGTCTATTGGGTGATTTTCTCATATTGTAAGAATTGTGTAAATAATACCCTTTAGAAGTGGTTAAatccaattaaaaacacacaaaaaaatattccaaagatcacactattatattataactGTTGTAACTGGTTATTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5770 True 457 lncRNA 0.38 1 16607919 16608375

Neighbor

gene id symbol gene type direction distance location
LOC103030646 NA coding downstream 60179 16542948 ~ 16547740 (-)
LOC103047885 NA coding downstream 156917 16439618 ~ 16451002 (-)
plekhg2 NA coding downstream 195320 16339721 ~ 16412599 (-)
supt5h supt5h,LOC107586261,LOC107657557 coding downstream 297270 16291524 ~ 16310649 (-)
LOC103025059 tnfaip1,LOC108425816,LOC108277497,LOC107586309,LOC107728221,LOC107597551,LOC107657549,LOC107729096,LOC107662792 coding downstream 449258 16148608 ~ 16158661 (-)
LOC103044128 ckm,ckmb,LOC107690449,LOC107718278,LOC107601735 coding upstream 10736 16619111 ~ 16622984 (-)
LOC103043199 NA coding upstream 47860 16656235 ~ 16658680 (-)
zc3h4 zc3h4,LOC107683834,LOC107601737,LOC107690443,LOC107718283,LOC107585556 coding upstream 65726 16674101 ~ 16686184 (-)
LOC103041159 NA coding upstream 1274401 17882776 ~ 17914128 (-)
mpzl3 NA coding upstream 1336699 17945074 ~ 17975882 (-)
G4257 mark4 non-coding downstream 702 16606937 ~ 16607217 (-)
G4256 NA non-coding downstream 5806 16601901 ~ 16602113 (-)
G4255 NA non-coding downstream 6817 16600878 ~ 16601102 (-)
G4254 mark4,LOC106612588,LOC106580867 non-coding downstream 10019 16597588 ~ 16597900 (-)
G4253 NA non-coding downstream 28052 16579482 ~ 16579867 (-)
G4260 mark4,si:dkey-31m14.7,LOC107585548 non-coding upstream 2715 16611090 ~ 16617994 (-)
G4261 NA non-coding upstream 9668 16618043 ~ 16618921 (-)
G4284 sae1,LOC107718284 non-coding upstream 80887 16689262 ~ 16691809 (-)
G4286 NA non-coding upstream 321093 16929468 ~ 16929686 (-)
G4291 NA non-coding upstream 343985 16952360 ~ 16952635 (-)
LOC103022652 LOC103022652,LOC108425821,LOC108277503 other downstream 325287 16278005 ~ 16282632 (-)
slc6a4 slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 other downstream 2136167 14380755 ~ 14471752 (-)
G3612 NA other downstream 2323694 14283623 ~ 14284225 (-)
LOC111189390 NA other downstream 2474682 14124173 ~ 14133237 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other downstream 3035547 13544500 ~ 13572372 (-)
ercc2 ercc2,LOC107743694,LOC107601732 other upstream 36117 16644492 ~ 16653968 (-)
LOC103040336 mpzl2 other upstream 1375510 17983885 ~ 17998749 (-)
G4621 NA other upstream 1421987 18030362 ~ 18040766 (-)
LOC103031959 NA other upstream 1588205 18196580 ~ 18226004 (-)
LOC103038769 NA other upstream 3030990 19639365 ~ 19648822 (-)

Expression


Co-expression Network