G4478


Basic Information

Item Value
gene id G4478
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 17338051 ~ 17338268 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU6029
aactgttagaactaaaggtcggaaagcaggtcgcagttctcgcgagcgttggtcgcagccgcctcggaaaacttacagagtctggtttgagctcagaggagctccggcacagacacgagagcaccgctattcctcctattacacctcaatgcagcgctgcagtgagtttcaagctgtaattttacttctttaaaaagatcaaaaatcaaggaaatcct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6029 True 218 lncRNA 0.41 1 17338051 17338268

Neighbor

gene id symbol gene type direction distance location
zc3h4 zc3h4,LOC107683834,LOC107601737,LOC107690443,LOC107718283,LOC107585556 coding downstream 651867 16674101 ~ 16686184 (-)
LOC103043199 NA coding downstream 679371 16656235 ~ 16658680 (-)
LOC103044128 ckm,ckmb,LOC107690449,LOC107718278,LOC107601735 coding downstream 715067 16619111 ~ 16622984 (-)
LOC103030646 NA coding downstream 790311 16542948 ~ 16547740 (-)
LOC103047885 NA coding downstream 887049 16439618 ~ 16451002 (-)
LOC103041159 NA coding upstream 544508 17882776 ~ 17914128 (-)
mpzl3 NA coding upstream 606806 17945074 ~ 17975882 (-)
LOC103039101 tmem25 coding upstream 709269 18047537 ~ 18060269 (-)
sik3 sik3 coding upstream 729611 18067879 ~ 18118621 (-)
LOC107196958 NA coding upstream 837506 18175774 ~ 18181003 (-)
G4338 NA non-coding downstream 180200 17157619 ~ 17157851 (-)
G4335 NA non-coding downstream 182955 17154869 ~ 17155096 (-)
G4332 NA non-coding downstream 192839 17144898 ~ 17145212 (-)
G4319 NA non-coding downstream 265863 17071972 ~ 17072188 (-)
G4312 NA non-coding downstream 300405 17037236 ~ 17037646 (-)
G4479 NA non-coding upstream 23545 17361813 ~ 17362236 (-)
G4480 NA non-coding upstream 28579 17366847 ~ 17367237 (-)
G4499 NA non-coding upstream 509491 17847759 ~ 17851443 (-)
G4513 NA non-coding upstream 665823 18004091 ~ 18009184 (-)
LOC111192371 NA non-coding upstream 692729 18030997 ~ 18034451 (-)
ercc2 ercc2,LOC107743694,LOC107601732 other downstream 684083 16644492 ~ 16653968 (-)
LOC103022652 LOC103022652,LOC108425821,LOC108277503 other downstream 1055419 16278005 ~ 16282632 (-)
slc6a4 slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 other downstream 2866299 14380755 ~ 14471752 (-)
G3612 NA other downstream 3053826 14283623 ~ 14284225 (-)
LOC111189390 NA other downstream 3204814 14124173 ~ 14133237 (-)
LOC103040336 mpzl2 other upstream 645617 17983885 ~ 17998749 (-)
G4621 NA other upstream 692094 18030362 ~ 18040766 (-)
LOC103031959 NA other upstream 858312 18196580 ~ 18226004 (-)
LOC103038769 NA other upstream 2301097 19639365 ~ 19648822 (-)
LOC103038464 NA other upstream 2314518 19652786 ~ 19655913 (-)

Expression


Co-expression Network