G4480


Basic Information

Item Value
gene id G4480
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 17366847 ~ 17367237 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU6031
gctgccactatgaggaggaggtcgccggttcgaaccccagctcatgcagctttgccatcaagctgccggtgtcagagggagcaaaattggccctgctccctctgggtgggtagatggcgctctttccccacatcactcctacggtgatgtctgcagcacagggcgtctgtgagctgatgtaccagagccgagccgctgtgctttcctccaagcgcgctggctgctcggtaatgctgcatcagcagcagcagctcgaaaagaagcggtggctgacttcacatgtatcggaggaagcatgtgttagtcttcaccctcctggtgtgttgaggtatcactagtgatagggggagtcctaatgaatgggttgggtaattggccgtgtaaattgggg

Function

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

RNA

RNA id representative length rna type GC content exon number start site end site
TU6031 True 391 lncRNA 0.42 1 17366847 17367237

Neighbor

gene id symbol gene type direction distance location
zc3h4 zc3h4,LOC107683834,LOC107601737,LOC107690443,LOC107718283,LOC107585556 coding downstream 680663 16674101 ~ 16686184 (-)
LOC103043199 NA coding downstream 708167 16656235 ~ 16658680 (-)
LOC103044128 ckm,ckmb,LOC107690449,LOC107718278,LOC107601735 coding downstream 743863 16619111 ~ 16622984 (-)
LOC103030646 NA coding downstream 819107 16542948 ~ 16547740 (-)
LOC103047885 NA coding downstream 915845 16439618 ~ 16451002 (-)
LOC103041159 NA coding upstream 515539 17882776 ~ 17914128 (-)
mpzl3 NA coding upstream 577837 17945074 ~ 17975882 (-)
LOC103039101 tmem25 coding upstream 680300 18047537 ~ 18060269 (-)
sik3 sik3 coding upstream 700642 18067879 ~ 18118621 (-)
LOC107196958 NA coding upstream 808537 18175774 ~ 18181003 (-)
G4479 NA non-coding downstream 4611 17361813 ~ 17362236 (-)
G4478 NA non-coding downstream 28579 17338051 ~ 17338268 (-)
G4338 NA non-coding downstream 208996 17157619 ~ 17157851 (-)
G4335 NA non-coding downstream 211751 17154869 ~ 17155096 (-)
G4332 NA non-coding downstream 221635 17144898 ~ 17145212 (-)
G4499 NA non-coding upstream 480522 17847759 ~ 17851443 (-)
G4513 NA non-coding upstream 636854 18004091 ~ 18009184 (-)
LOC111192371 NA non-coding upstream 663760 18030997 ~ 18034451 (-)
LOC111192372 NA non-coding upstream 667235 18034472 ~ 18040751 (-)
G4619 NA non-coding upstream 695924 18063161 ~ 18066938 (-)
ercc2 ercc2,LOC107743694,LOC107601732 other downstream 712879 16644492 ~ 16653968 (-)
LOC103022652 LOC103022652,LOC108425821,LOC108277503 other downstream 1084215 16278005 ~ 16282632 (-)
slc6a4 slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 other downstream 2895095 14380755 ~ 14471752 (-)
G3612 NA other downstream 3082622 14283623 ~ 14284225 (-)
LOC111189390 NA other downstream 3233610 14124173 ~ 14133237 (-)
LOC103040336 mpzl2 other upstream 616648 17983885 ~ 17998749 (-)
G4621 NA other upstream 663125 18030362 ~ 18040766 (-)
LOC103031959 NA other upstream 829343 18196580 ~ 18226004 (-)
LOC103038769 NA other upstream 2272128 19639365 ~ 19648822 (-)
LOC103038464 NA other upstream 2285549 19652786 ~ 19655913 (-)

Expression


Co-expression Network