LOC103040336 (mpzl2)


Basic Information

Item Value
gene id LOC103040336
gene name mpzl2
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 17983885 ~ 17998749 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU6059
GCGGGATGTGTGTGAACCCGGCTCTCCTGCATCTCCTGCAGCTCCTGCTCAGTCTGCACATGTCAGgctgGCTGGGTGTAGATGCTATTCGAGTGTATACTTCAGGATATGTAGAGGCGGTGAATGGGACGGACGTTCGACTTAAGTGCTCCTTCTCAAGCTCCGCCCCCATAAGACGCTCCGCCCTTACCATTTCCTGGAGCTTCAGGCCCCCTGGGCCCCGGAAACGAGGAGACAGTGTTCTACTACCATGAGAAGCCCTTCCCCCCGTCGGAGGGCCGCTTCATGAAGAAGATAATATGGTCGGGGGATATTTCTTCGCGGGACGCCTCCATTGTGGTGCGAAACGTGAAGTTCAGTTACAATGGAACCTTCAGCTGTCATGTGAAGAACCCACCGGACGTTCACGGAAACGTGGGAGAGGTGCGGCTACGAGTCGTCACTTCAGcCTCTTTCTCAGAGATCGTAATTCTTGCGGTGGCCATTGGAGGCGCTGTCCTTCTGATTATAATCATCCTCATTGGGATAGCGTCTATAAGGAGATGTCGGAAGAAGGAGAGAATGGAGAGGGAAGAGGTTGTTCCCAGGAGATACAAAGATCCTGACCTgtggtaaaagagagagagagagagagagagagagagagagggatgaaatATTACTCAGCCAACTGAAAAACAGGTTTCATATTTCATGAAATGCCCTCTTGATCTTTcccatataaacacacataaagCCTTCCAGCACTCACTGTGAATGTAATTCTCATCAATCTCCTGAAAATACCAGCAAACTGCTGccaaactggccactttaatggaAACATACTTTCTACTACATTGTACAGACCCAAATCATCATTTTCTTTGGCTTttgtttgattgcagacagtatgaaccaaaTGTACCAGTcaaataccagtcaaaaatatatagaaaaacatatggaatattTAGTgagcaaaaaagtgttaaacaaaccagaatatgctttatattttactttcttcaaagtagcacttcTTGATTAAATTAGagagttttgcacatcttggctgcattttctcagtcagctttatgaggtagagtcacctggaattcaggcttccagttaacagctgtgctgaactcgtcaagagttaataacttgaatttcttgcctcttaatttgtttgagagcatcagttgtaaagttgtgaagaggtagagttacaggtatacagtgaatagctctatttgagtaatgttctaatacatattatgagaagaaaaaactacttaactaagtaaagaattactctaagaaatgaaggtcagttaatttgaaacatttcaagagctttgaaagtatcctcaagtgcagtcacgtataagaccatcaaaaatgttatgatggaactggcactcatcaggaccaccccaggaaaggaagagcaagagttccttcTGTTGAACAGGATtaattcatcagagttaccagcctcagaaaccacaagttaacagctccccagataagggcacctaaatgcttctttacagagtattttggtttgtttaacacttttaacttactacatgattccttatgtgttccttcatagtctggatcactttaatattcatttacaatcaatgtaaaacttaaatattactaaaatattttaaatgagaaggtgtttccTGCAACACAAAAGACACGTTATAACTGGTAGTGAAACAGCTACTACCTTGTAAatcaactcactggccact
>XM_007229571.3
CTGGCCATAACCAGCGGGATGTGTGTGAACCCGGCTCTCCTGCATCTCCTGCAGCTCCTGCTCAGTCTGCACATGTCAGgctgGCTGGGTGTAGATGCTATTCGAGTGTATACTTCAGGATATGTAGAGGCGGTGAATGGGACGGACGTTCGACTTAAGTGCTCCTTCTCAAGCTCCGCCCCCATAAGACGCTCCGCCCTTACCATTTCCTGGAGCTTCAGGCCCCTGGGCCCCGGAAACGAGGAGACAGTGTTCTACTACCATGAGAAGCCCTTCCCCCCGTCGGAGGGCCGCTTCATGAAGAAGATAATATGGTCGGGGGATATTTCTTCGCGGGACGCCTCCATTGTGGTGCGAAACGTGAAGTTCAGTTACAATGGAACCTTCAGCTGTCATGTGAAGAACCCACCGGACGTTCACGGAAACGTGGGAGAGGTGCGGCTACGAGTCGTCACTTCAGcCTCTTTCTCAGAGATCGTAATTCTTGCGGTGGCCATTGGAGGCGCTGTCCTTCTGATTATAATCATCCTCATTGGGATAGCGTCTATAAGGAGATGTCGGAAGAAGGAGAGAATGGAGAGGGAAGAGGTTGTTCCCAGGAGATACAAAGATCCTGACCTgtggtaaaagagagagagagagagagagagagagagagagggatgaaatATTACTCAGCCAACTGAAAAACAGGTTTCATATTTCATGAAATGCCCTCTTGATCTTTcccatataaacacacataaagCCTTCCAGCACTCACTGTGAATGTAATTCTCATCAATCTCCTGAAAATACCAGCAAACTGCTGccaaactggccactttaatggaAACATACTTTCTACTACATTGTACAGA

Function

symbol description
mpzl2 Predicted to be involved in cell-cell adhesion. Predicted to act upstream of or within T cell differentiation in thymus. Predicted to be located in cytoskeleton. Predicted to be active in plasma membrane. Implicated in autosomal recessive nonsyndromic deafness 111.

NR:

description
PREDICTED: myelin protein zero-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6059 True 1751 TUCP 0.42 4 17983885 17998736
XM_007229571.3 False 860 mRNA 0.50 5 17984788 17998749

Neighbor

gene id symbol gene type direction distance location
mpzl3 NA coding downstream 8003 17945074 ~ 17975882 (-)
LOC103041159 NA coding downstream 69757 17882776 ~ 17914128 (-)
zc3h4 zc3h4,LOC107683834,LOC107601737,LOC107690443,LOC107718283,LOC107585556 coding downstream 1297701 16674101 ~ 16686184 (-)
LOC103043199 NA coding downstream 1325205 16656235 ~ 16658680 (-)
LOC103044128 ckm,ckmb,LOC107690449,LOC107718278,LOC107601735 coding downstream 1360901 16619111 ~ 16622984 (-)
LOC103039101 tmem25 coding upstream 48788 18047537 ~ 18060269 (-)
sik3 sik3 coding upstream 69130 18067879 ~ 18118621 (-)
LOC107196958 NA coding upstream 177025 18175774 ~ 18181003 (-)
cep164 cep164 coding upstream 189097 18187846 ~ 18202965 (-)
LOC103030909 LOC108443025 coding upstream 205296 18204045 ~ 18210644 (-)
G4499 NA non-coding downstream 132442 17847759 ~ 17851443 (-)
G4480 NA non-coding downstream 616648 17366847 ~ 17367237 (-)
G4479 NA non-coding downstream 621649 17361813 ~ 17362236 (-)
G4478 NA non-coding downstream 645617 17338051 ~ 17338268 (-)
G4338 NA non-coding downstream 826034 17157619 ~ 17157851 (-)
G4513 NA non-coding upstream 5342 18004091 ~ 18009184 (-)
LOC111192371 NA non-coding upstream 32248 18030997 ~ 18034451 (-)
LOC111192372 NA non-coding upstream 35723 18034472 ~ 18040751 (-)
G4619 NA non-coding upstream 64412 18063161 ~ 18066938 (-)
G4638 NA non-coding upstream 132092 18130841 ~ 18132384 (-)
ercc2 ercc2,LOC107743694,LOC107601732 other downstream 1329917 16644492 ~ 16653968 (-)
LOC103022652 LOC103022652,LOC108425821,LOC108277503 other downstream 1701253 16278005 ~ 16282632 (-)
slc6a4 slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 other downstream 3512133 14380755 ~ 14471752 (-)
G3612 NA other downstream 3699660 14283623 ~ 14284225 (-)
LOC111189390 NA other downstream 3850648 14124173 ~ 14133237 (-)
G4621 NA other upstream 31613 18030362 ~ 18040766 (-)
LOC103031959 NA other upstream 197831 18196580 ~ 18226004 (-)
LOC103038769 NA other upstream 1640616 19639365 ~ 19648822 (-)
LOC103038464 NA other upstream 1654037 19652786 ~ 19655913 (-)
LOC111192876 NA other upstream 2487845 20486594 ~ 20492524 (-)

Expression


Co-expression Network