G502 (hectd3,LOC107729394)


Basic Information

Item Value
gene id G502
gene name hectd3,LOC107729394
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 1751182 ~ 1753854 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU621
GGAACAGGTCGAGGACTGCGGGAGTGCGTCTGTAGTTTCAGATCCCTGTTTATCTGGGAAGACGTAGATCGGAGCTGGAAGGCGACTTCTCCCCGTTACGAATCTCAAGAACCTGCTGCGGTCCTCATTAGTAAAGTTGGTCAGGGCTTCCCACAGATGCTGCACTCTGACATCTGTCTGTTCCAGATCCTCATAACGAGTAAGGCGTTTCAGAGCCTCCACAGTGATCTCCGGGTCTCCACACACTttcttctccacctcctgccacGTCAGAAGATCCAGCACAGCCTGCGGCACCACCTTCATGAGGCCTGCCTGGATGGCAGCTAT

Function

symbol description
hectd3 Predicted to enable ubiquitin-protein transferase activity. Is expressed in hatching gland; notochord; and polster. Orthologous to human HECTD3 (HECT domain E3 ubiquitin protein ligase 3).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase HECTD3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU621 True 330 lncRNA 0.58 4 1751182 1753854

Neighbor

gene id symbol gene type direction distance location
acadm acadm,LOC107674066,LOC107602542,LOC107688505,LOC107584839 coding downstream 21796 1719812 ~ 1729386 (-)
rabggtb rabggtb,LOC107732517,LOC107584851,LOC107576861 coding downstream 33528 1707739 ~ 1717654 (-)
LOC111192362 NA coding downstream 254755 1493166 ~ 1496427 (-)
LOC103021504 LOC103021504,LOC108442331 coding downstream 604800 1138245 ~ 1146382 (-)
LOC103043916 NA coding downstream 879203 864798 ~ 871979 (-)
best4 best4,LOC106569841,LOC108262062 coding upstream 10410 1764264 ~ 1772891 (-)
LOC103045337 NA coding upstream 29350 1783204 ~ 1792128 (-)
LOC103044599 glis1,LOC107602512,LOC106952155 coding upstream 42707 1796561 ~ 1833032 (-)
ndc1 ndc1 coding upstream 81887 1835741 ~ 1858224 (-)
LOC103041746 LOC103041746,LOC108432452,LOC107602511 coding upstream 106559 1860413 ~ 1862727 (-)
G496 hectd3 non-coding downstream 13265 1736394 ~ 1737917 (-)
G471 NA non-coding downstream 213123 1487880 ~ 1538059 (-)
G476 ptbp1a,LOC107729315,LOC107584874,LOC108432475,LOC107602545,LOC107674042,LOC107688524,LOC107732511 non-coding downstream 228437 1511045 ~ 1522745 (-)
G474 NA non-coding downstream 259899 1489288 ~ 1491283 (-)
G425 NA non-coding downstream 304300 1446675 ~ 1446882 (-)
G504 NA non-coding upstream 525 1754379 ~ 1756314 (-)
G589 rps8,rps8a,LOC107674081,LOC107688507,LOC107602544 non-coding upstream 4126 1757980 ~ 1763623 (-)
G608 NA non-coding upstream 123655 1877509 ~ 1894453 (-)
G616 sept2 non-coding upstream 262702 2016556 ~ 2035389 (-)
G644 NA non-coding upstream 312721 2066575 ~ 2067409 (-)
LOC111197534 NA other downstream 895022 855579 ~ 856160 (-)
LOC103037308 LOC108440474,LOC108278112,LOC107585786,LOC107669856,LOC107745208 other downstream 1080467 589669 ~ 670715 (-)
yipf1 yipf1 other upstream 110661 1864515 ~ 1873127 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other upstream 166626 1920480 ~ 1928255 (-)
znf414 NA other upstream 669859 2423713 ~ 2434401 (-)
G807 NA other upstream 796362 2550216 ~ 2600511 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other upstream 1156900 2910754 ~ 2970340 (-)

Expression


Co-expression Network