G4621


Basic Information

Item Value
gene id G4621
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 18030362 ~ 18040766 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU6226
TATGAgaaatgcaaacacacacacacacacacagcccgcacagatacacacacttcCTCCCAACAACAGAAGAGACAGAGCGATCATTGCAGAGGAGCTGAGTGCGAGTGTTTGAGgaaaaggaaaaggagaaaagcgagtgagagaaatgGAAAGAGTGATTGTGATTCTTGCTGTGCTGGTGTTAGCACAGGCAGCTGAAGGAATAATTTCTGTAAAGACAGTCTCGGACGATCGGGCTCAATTAGAATGCACTGGAACTTGGACAAATGCAAAGGAATCAATTTGGACGGTAGACCTCCGTGTTGATAACTCTTCTATGGACACCTGTACTCCAAAAACAGATGGCACAGGCAAAGGCATTACATCAGCAAAATTGTATGTCAAAGTCAGAACCGCTGCTAACCTCATTGAAATGGACATAGTGACCCTCATCTCCATTATCGGAGGCAATATTGTGATGTATATCCTGTTAGGAGTGGTGGTGTACAACCTCTCCTCTCAGCCCAGGGCTCAAAGGACCTTTTCTGGCAACAAAGCTTCAGATAAACAGGTTCTGATACAGAATGGCGAGCGAGACACTTATCAGcaatTAAAATGCAATAAGTCTG

Function

GO: NA

KEGG:

id description
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
TU6226 True 611 TUCP 0.52 6 18030362 18040766

Neighbor

gene id symbol gene type direction distance location
mpzl3 NA coding downstream 54480 17945074 ~ 17975882 (-)
LOC103041159 NA coding downstream 116234 17882776 ~ 17914128 (-)
zc3h4 zc3h4,LOC107683834,LOC107601737,LOC107690443,LOC107718283,LOC107585556 coding downstream 1344178 16674101 ~ 16686184 (-)
LOC103043199 NA coding downstream 1371682 16656235 ~ 16658680 (-)
LOC103044128 ckm,ckmb,LOC107690449,LOC107718278,LOC107601735 coding downstream 1407378 16619111 ~ 16622984 (-)
LOC103039101 tmem25 coding upstream 6771 18047537 ~ 18060269 (-)
sik3 sik3 coding upstream 27113 18067879 ~ 18118621 (-)
LOC107196958 NA coding upstream 135008 18175774 ~ 18181003 (-)
cep164 cep164 coding upstream 147080 18187846 ~ 18202965 (-)
LOC103030909 LOC108443025 coding upstream 163279 18204045 ~ 18210644 (-)
G4513 NA non-coding downstream 21178 18004091 ~ 18009184 (-)
G4499 NA non-coding downstream 178919 17847759 ~ 17851443 (-)
G4480 NA non-coding downstream 663125 17366847 ~ 17367237 (-)
G4479 NA non-coding downstream 668126 17361813 ~ 17362236 (-)
G4478 NA non-coding downstream 692094 17338051 ~ 17338268 (-)
G4619 NA non-coding upstream 22395 18063161 ~ 18066938 (-)
G4638 NA non-coding upstream 90075 18130841 ~ 18132384 (-)
G4644 NA non-coding upstream 116441 18157207 ~ 18158131 (-)
LOC111192376 NA non-coding upstream 129994 18170760 ~ 18173336 (-)
G4655 NA non-coding upstream 175365 18216131 ~ 18216727 (-)
LOC103040336 mpzl2 other downstream 31613 17983885 ~ 17998749 (-)
ercc2 ercc2,LOC107743694,LOC107601732 other downstream 1376394 16644492 ~ 16653968 (-)
LOC103022652 LOC103022652,LOC108425821,LOC108277503 other downstream 1747730 16278005 ~ 16282632 (-)
slc6a4 slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 other downstream 3558610 14380755 ~ 14471752 (-)
G3612 NA other downstream 3746137 14283623 ~ 14284225 (-)
LOC103031959 NA other upstream 155814 18196580 ~ 18226004 (-)
LOC103038769 NA other upstream 1598599 19639365 ~ 19648822 (-)
LOC103038464 NA other upstream 1612020 19652786 ~ 19655913 (-)
LOC111192876 NA other upstream 2445828 20486594 ~ 20492524 (-)
G5095 eif4g1 other upstream 2589459 20630225 ~ 20637068 (-)

Expression


Co-expression Network