LOC111192376


Basic Information

Item Value
gene id LOC111192376
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 18170760 ~ 18173336 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU6240
tctcattatttttagatgcTAAGTAATTTTGGGATGCTGTCACTATTTTGATGTAgtcattttttgagatacttgtgtttttgagaaattATTTTCAGATGctctctcattattttgagatacattTCGGAGATGCTATCTaataattttgagatactgtaaTTTTTTGAGAAATTAAGTTGTTACTGTCAggtgctatctcattattttgagatactaaatcattttaagatACCAtcttgttattttaagatactaaatcatttttatgtcattattttgagatatatgAAGTATCTCTAAATatcaagatagatagatatatagatagatatatagatagatatatagatagatactttattatcTGGAGCATCTCtaaatgacttagtatctcaaaataataagagtcgaaaaaatctgaaaaaaaattagatactGAGCCATTTTGAAAAGctcattttgagatgctatcttgTTATTTTAAGTCAGCAAAAATCCACttactattttataataatgagATTTTGAGATTGTTgctggatttattttttatattagGTGGTGGTGAGGAGCTTTCATAGCCTAGCGATGCTGCATTGATTGGCagaagttggaaaagaggcggagtctgacttcattgCAGgtgattgggtaattggctcaGCTGAATTGAGAGACAGTAGCTCCATGAGGAATACAATTTTACAAGAGCTGTGTGAAAGTTGTCCAACCTAGCAACAGTAGCTACGGAAGAACACATTAGTGGGCGGAGCCTGGTTAGGGCAACAGTAGCTGAATCTCAGCAGTGTGAATGCTGAtataaatgatgattttttttacaataatggAATTTTACTATAAGTTTCCCTTTTGCCTAACTGTAAAAGCAGATAGTCTAAAACAAAGTCGCTTTTTAGCTGTTATTTTTGGAAACCAAACCCCCCAGCTTGCTTCCACATCCCGTACGTTACTGACTGAGAGCTTACTAAATGTCTTAAGGGCCGGCCCACCAGCAGCATTTCTGTAAGCCATAAGCAAACGTCACAAAAAGCACAAGGTTGTTTACAAACGTGTCACTTTGGGACCAAGACCGAGTTTAGCCTGTAAACTCCGCCCCCTTTTTTGTGTAGATGTgaatttgtacatttatttttgtaagactgaaataaatgcagtgtttt
>XR_002649880.1
ttatcTGGAGCATCTCtaaatgacttagtatctcaaaataataagagtcgaaaaaatctgaaaaaaaattagatactGAGCCATTTTGAAAAGctcattttgagatgctatcttgTTATTTTAAGTCAGCAAAAATCCACttactattttataataatgagATTTTGAGATTGTTgctggatttattttttatattagGTGGTGGTGAGGAGCTTTCATAGCCTAGCGATGCTGCATTGATTGGCagaagttggaaaagaggcggagtctgacttcattgCAGgtgattgggtaattggctcaGCTGAATTGAGAGACAGTAGCTCCATGAGGAATACAATTTTACAAGAGCTGTGTGAAAGTTGTCCAACCTAGCAACAGTAGCTACGGAAGAACACATTAGTGGGCGGAGCCTGGTTAGGGCAACAGTAGCTGAATCTCAGCAGTGTGAATGCTGAtataaatgatgattttttttacaataatggAATTTTACTATAAGTTTCCCTTTTGCCTAACTGTAAAAGCAGATAGTCTAAAACAAAGTCGCTTTTTAGCTGTTATTTTTGGAAACCAAACCCCCCAGCTTGCTTCCACATCCCGTACGTTACTGACTGAGAGCTTACTAAATGTCTTAAGGGCCGGCCCACCAGCAGCATTTCTGTAAGCCATAAGCAAACGTCACAAAAAGCACAAGGTTGTTTACAAACGTGTCACTTTGGGACCAAGACCGAGTTTAGCCTGTAAACTCCGCCCCCTTTTTTGTGTAGATGTgaatttgtacatttatttttgtaagactgaaataaatgcagtgtttttatatCAGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6240 True 1184 lncRNA 0.34 2 18170771 18173336
XR_002649880.1 False 832 lncRNA 0.38 2 18170760 18172973

Neighbor

gene id symbol gene type direction distance location
sik3 sik3 coding downstream 52139 18067879 ~ 18118621 (-)
LOC103039101 tmem25 coding downstream 110491 18047537 ~ 18060269 (-)
mpzl3 NA coding downstream 194878 17945074 ~ 17975882 (-)
LOC103041159 NA coding downstream 256632 17882776 ~ 17914128 (-)
zc3h4 zc3h4,LOC107683834,LOC107601737,LOC107690443,LOC107718283,LOC107585556 coding downstream 1484576 16674101 ~ 16686184 (-)
LOC107196958 NA coding upstream 2438 18175774 ~ 18181003 (-)
cep164 cep164 coding upstream 14510 18187846 ~ 18202965 (-)
LOC103030909 LOC108443025 coding upstream 30709 18204045 ~ 18210644 (-)
samd4b samd4b coding upstream 61418 18234754 ~ 18248467 (-)
paf1 paf1 coding upstream 83870 18257206 ~ 18266997 (-)
G4644 NA non-coding downstream 12629 18157207 ~ 18158131 (-)
G4638 NA non-coding downstream 38376 18130841 ~ 18132384 (-)
G4619 NA non-coding downstream 103822 18063161 ~ 18066938 (-)
LOC111192372 NA non-coding downstream 130009 18034472 ~ 18040751 (-)
LOC111192371 NA non-coding downstream 136309 18030997 ~ 18034451 (-)
G4655 NA non-coding upstream 42795 18216131 ~ 18216727 (-)
G4630 NA non-coding upstream 81769 18255105 ~ 18256327 (-)
LOC103033003 NA non-coding upstream 94679 18268015 ~ 18273460 (-)
G4678 NA non-coding upstream 212347 18385683 ~ 18387375 (-)
G4671 NA non-coding upstream 215936 18389272 ~ 18504882 (-)
G4621 NA other downstream 129994 18030362 ~ 18040766 (-)
LOC103040336 mpzl2 other downstream 172011 17983885 ~ 17998749 (-)
ercc2 ercc2,LOC107743694,LOC107601732 other downstream 1516792 16644492 ~ 16653968 (-)
LOC103022652 LOC103022652,LOC108425821,LOC108277503 other downstream 1888128 16278005 ~ 16282632 (-)
slc6a4 slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 other downstream 3699008 14380755 ~ 14471752 (-)
LOC103031959 NA other upstream 23244 18196580 ~ 18226004 (-)
LOC103038769 NA other upstream 1466029 19639365 ~ 19648822 (-)
LOC103038464 NA other upstream 1479450 19652786 ~ 19655913 (-)
LOC111192876 NA other upstream 2313258 20486594 ~ 20492524 (-)
G5095 eif4g1 other upstream 2456889 20630225 ~ 20637068 (-)

Expression


Co-expression Network