G4638


Basic Information

Item Value
gene id G4638
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 18130841 ~ 18132384 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU6248
ccttttatttcttgtaattttgtataatttttgtcccccccccccaatcAGTCAGGCACCGTCTCTTTTTGAATtcctgctgatgcagcattgccgagtagcatcacagtgcgctcggagaaAAGCACACCGAcatggttctgatacatcagctcgcagatgccttgtgctgatcgacatcaccttaggggtgatgaggggaaagagcgccatctagccggaagctgatggcaagctgcattacCAGGATTTAAACCGACCATAGTGGCggatatttcttttatttctgtttataaacaaGGGAgtaatctactgttacagtaaatacatgAACTTCCATTTGTGTTCACATTGCATAAGTAAATACAAGAAGAAGCTTCTTTTTTTCTGGGCTAGCACTTTCATTTACAGCAGCATTTAGCATTGAGATGAAAAATTGAGATGATGTTTATTCATAActgtattattagtaatatatgTGCAATAAAGCAAGTTTAGCTCAAACTTGTTGCATACATTACAACCACTCAAGAGTTTATTGGAGACCAGATCGTAACCACCTCCTCTAATGGATTGTTACAATCCATCTGCATCAGAGCATGACTAAGGTATACACCAATGCTTTTCAATAGTTTGGACTTtctgaccaattacaggaagacTATAGTCAAAGGCCAATCTGTTTGAATGTAAAGAGACCAAAATACCCTAAATTGAAGGTCTAACTTCCATGTGAACACCATCATTTAAATTACTGATACAATCTTATGAACAGTTTTTAACGTTTGGTTTAAAAAACGCACAAAACAACTTAATATTCCAGCTTATTATGGCTACTGtgcctgcgcagatctccacagcgAGAGGAGGCCTCCACACCAGCACACCTAAAAAGAAGAACAATCTGCCTGTCCTTCATATGCACGCAACACTGACAATCCTGGTAATTgctatatctactgtaactgtagattaccCTTTATTTAGACACAtatttttttacatttattcatgAAATTCAGCATCTGCCCACTGGATTcaattatgtgtgtgttactTTTAATCCCAAACTGCTATGGTCTGTGGTAACCGATTGTACCCTACAGGTGCAGCACGTGGAGATTGGGTTGAAACATGTACTGTAGTATGGAGTATTCCTTTAATATGTCCTTTCATACTCTACATCTatgtctctatgtctctctttatctttaagGTAAGGTGGTCTGTTTCTCGTCGGGGGTCTCCTCCAGTATCTGCAGCAGCAGATCGTGCAGTGGCCGGGCCACCTTTCGATATCCAGCTGAGGTGAGGTGCAGGTAGTCGAACATGTCCCGGGACGAGATGGTTCCGTCTGAGTGGGTGAAGCCTGAGCTGAGGTCTAGAAGCTGGACTGAACTTAGTCTGGATGCCGAAGCCCGCAGGAGATCGTTCACCTTAGCGTTCTTCTCACGCAGGGGGTTTTGCCGTTCTCCACGAGGCAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6248 True 1485 lncRNA 0.42 2 18130841 18132384

Neighbor

gene id symbol gene type direction distance location
sik3 sik3 coding downstream 12220 18067879 ~ 18118621 (-)
LOC103039101 tmem25 coding downstream 70572 18047537 ~ 18060269 (-)
mpzl3 NA coding downstream 154959 17945074 ~ 17975882 (-)
LOC103041159 NA coding downstream 216713 17882776 ~ 17914128 (-)
zc3h4 zc3h4,LOC107683834,LOC107601737,LOC107690443,LOC107718283,LOC107585556 coding downstream 1444657 16674101 ~ 16686184 (-)
LOC107196958 NA coding upstream 43390 18175774 ~ 18181003 (-)
cep164 cep164 coding upstream 55462 18187846 ~ 18202965 (-)
LOC103030909 LOC108443025 coding upstream 71661 18204045 ~ 18210644 (-)
samd4b samd4b coding upstream 102370 18234754 ~ 18248467 (-)
paf1 paf1 coding upstream 124822 18257206 ~ 18266997 (-)
G4619 NA non-coding downstream 63903 18063161 ~ 18066938 (-)
LOC111192372 NA non-coding downstream 90090 18034472 ~ 18040751 (-)
LOC111192371 NA non-coding downstream 96390 18030997 ~ 18034451 (-)
G4513 NA non-coding downstream 121657 18004091 ~ 18009184 (-)
G4499 NA non-coding downstream 279398 17847759 ~ 17851443 (-)
G4644 NA non-coding upstream 24823 18157207 ~ 18158131 (-)
LOC111192376 NA non-coding upstream 38376 18170760 ~ 18173336 (-)
G4655 NA non-coding upstream 83747 18216131 ~ 18216727 (-)
G4630 NA non-coding upstream 122721 18255105 ~ 18256327 (-)
LOC103033003 NA non-coding upstream 135631 18268015 ~ 18273460 (-)
G4621 NA other downstream 90075 18030362 ~ 18040766 (-)
LOC103040336 mpzl2 other downstream 132092 17983885 ~ 17998749 (-)
ercc2 ercc2,LOC107743694,LOC107601732 other downstream 1476873 16644492 ~ 16653968 (-)
LOC103022652 LOC103022652,LOC108425821,LOC108277503 other downstream 1848209 16278005 ~ 16282632 (-)
slc6a4 slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 other downstream 3659089 14380755 ~ 14471752 (-)
LOC103031959 NA other upstream 64196 18196580 ~ 18226004 (-)
LOC103038769 NA other upstream 1506981 19639365 ~ 19648822 (-)
LOC103038464 NA other upstream 1520402 19652786 ~ 19655913 (-)
LOC111192876 NA other upstream 2354210 20486594 ~ 20492524 (-)
G5095 eif4g1 other upstream 2497841 20630225 ~ 20637068 (-)

Expression


Co-expression Network