yipf1 (yipf1)


Basic Information

Item Value
gene id yipf1
gene name yipf1
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 1864515 ~ 1873127 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU795
NNNAGACGTTTTTCGATGTAGAGACTCACCAGgtgaAGGACAGGATCGTGGGGTCCGTGCTGCCGTGGCCTGGAAAAAACTTTGTCCGCCATTACATTAGGAACAACCCTGACCTGTATGGACCTTTCTGGATCTGCGCCACACTGGTCTTTGCCATTGGTATCAGTGGAAACATCTCCAGCTTCCTGGTGCATCACGGTCAGCCGCAGTATAAATACGTGCCGGAGTTCAGGAAAGTCACGATTGCAGCCACAGCCATCTACAGCTACGCCTGGCTGGTTCCACTGGCTCTTTGGGGCTTCCTGATGTGGAGGAACAGTAAAGTGTCCCGCATGGTGTCCTACTCATTTCtggagattgtgtgtgtgtatggctaCTCGCTTTCCATCTATATCCCTGCTGTGGTTTTGTGGATTATACCCAGTGAAGGACTCAGATGGTGCTCCATTGTTTTGGCTCTGTGTCTGTCAGGGTCTGTGCTGATGTTAACGTTTTGGCCGGCTATCCGGGATGACCACCCACGGGTGGTTCTGGCCGTTACTGTCACTATTGTGACGCTTCACGTTTTGCTTGCAGTTGGCTGTAAGGCGTATTTCTTCAGCACATACGACTCTTCAGCACCTGCGGCGAGTCCGGCACCGGCAGCGGCTGCGGCCAAGGTCGTACTGACCACACAGGCACATTGAGCTTCAGCTTTAGCTTCTCCTGTTGCCTGATTGGCCGGGTCAAGTTTCTGCCTCATGAGGTCATGGACCATCTGGATTTCAGCAGATTAGCGTCCCGCGGGTTCAGCTGTGAGGTTACCGACCCGAGACCATCACTGACACACTTATgattcctgtgtgtgtgtgtgtgggtgtgtgaaagtgtgtttgggtgtgtgggTGGTTAGCATTTTTACCTGACTTGTGGAATGTATGCTTTGATTGATCGCGAGTGTTCTGTTACTGGGTAGACTGGGTTAAGGATATATAACACTGTATGTAGCGGCGTCTGAAATATTGATGTTATAATTGAACTTGAGATGTCCACTAAAAGGGCCATTCTTCTGTTTCAGCTGATTGTGACTGGTACCTACACTAGATTACTGTTTCTCAGCCCTGGTCCTGGAGGAAGCCTGCTCTGCAATATTTAGGATGCTCTGGACTTTCAGACTCTTCAGTTTGGTTGTTAAAGATGCCGCGAATCACGGTCCAAATCACAGGACCAGAATTTGGTCAGAACGATAGAGGTGGTCTCAGCCCATATCTACTGAATCATGGTTTGATTAGTTTGCAGtggaaaaacacttttctagatgattcagactttcagaccaattacagaaagTTGAGTCAGGCTATTATCACCCAGTAaataatagaagaagaaaaagaagcagtgttGTGCAGGCCTTTCTCCCAGCAGTACAACAGGTTACAGTGATGATACACAACAgtaattgtaaaataattaaatctgaATTTCCAGATGGGTGATTTTCAGGTATGGATAGCTTCCAGAAACATTCAGGACAGTTCTGATACGGTTGTGAAAGTGAGTCTGGAGCTATATAAAAACCATCAAACATTTTGGAAGTTGTTTTGAActgtaacatttatttgtatCATGTAATAGTTTAAGGTTTAAGCCCTAAAAAGCCCTGGAACCAGGTCTTCAATAATAGTTCAGTTGACCCAGATATTGATACCTTTTTGCGTCCTTTAGGGAGGTAATAAAGTAGGATGAGAAACTGATACAGGACTACAGACTGTTATTATAGAACTATGAAGTGTTCTCTATGATCagtgaagctaaaaaaaatagattttgtgtagaaacaaggtggtaataatattattattaattggtTAATGAATCACGGTCTGATTCGTTCGCAGTGGAAAaccacttttctagatggttcggaatttcagaccaattacagaaagTTGAGTCAGGCTATTATATCCcagtaaataatagaaaaaaaaaaaaaaaagaagcagtgttgtgccaaaatccaaGCGCCCTTGGCGTTCAGGCATGTACCTATACTGCTGTGGGACAACAGATTTtactggtgattctgtatctactgtaactgtagattaacccttattataaacagaaataaaggaaaTCTGAGTGGAATCTAACACACTTATTCTGCTGTGGGACTCATCTGCAATGGAAGTGAGTTCTGgcagaattcggcacaacacctggaaaagcaGTTTACCAATCTGATAATGTTATTCAAAAACCAGTGTAAAGTTCGATATACGGCGACTCCGCCCATGTAGGTGATGATGACTGAACCTAATAAAAACTGCAGTGACAAACCAAGACTAGCCAAATTAAATTTTTTCCCAGCTCCAAACACATCTGATTCAGCCAGTCAGCTCTTTAACAACCCATTCCAGAGTTACTAGGGAATAGTTAAAGCAGGGAATCCAGTAAAATGTGCAGAGCAGGAtgcctccaggaccaggatttAGAAACACTGCTGTGAACGGCACTGTATTTATCTATAGCACAAATATATTAGCCACCTGCAGTATGTagaacatatttaataaaacccCAAATCGGAAAAGGTCGGGAAGGGTATGggaaatgcaaatatattatccttttttttatttttatttttctatttcagacagtatgaacccaatgTGTCAATGTTACTCTTCTCAacttgattttattcattattttacattcgttcctgcatttcagacatgcaacatatttataaaacgtTATGAAAAAGTCCTTGAAAGTTTTTAAAGGGAAAATGTTGGGTTCACACTTTtagtcataaaaaaataaaagccaaaataaaatgtaagaaacactgcagctttttattattagctttttccatactgtcccaacttCAGATTTAGTGTTGTAAAAGAGTAACTATTTCACACCTGTGTAAATGccaattcttattttttaaaaagcttttatcaTTATATTGTATCATAATAATCTAAATTGTTGTGAAGCATTGTTgtattgtatcatattgtaGTATTTTGGGAGATTGATAGGACTGTTTGATCTAACATTATGTGCCTTTACTAGGGTTGTATATATACATGccaacaaactgttaaaattgaATCCTTTAATAAATGTTCTCTTATTTGAAATGAATAATTATTAGaattaaat
>XM_022670226.1
AGACGTTTTTCGATGTAGAGACTCACCAGgtgaAGGACAGGATCGTGGGGTCCGTGCTGCCGTGGCCTGGAAAAAACTTTGTCCGCCATTACATTAGGAACAACCCTGACCTGTATGGACCTTTCTGGATCTGCGCCACACTGGTCTTTGCCATTGGTATCAGTGGAAACATCTCCAGCTTCCTGGTGCATCACGGTCAGCCGCAGTATAAATACGTGCCGGAGTTCAGGAAAGTCACGATTGCAGCCACAGCCATCTACAGCTACGCCTGGCTGGTTCCACTGGCTCTTTGGGGCTTCCTGATGTGGAGGAACAGTAAAGTGTCCCGCATGGTGTCCTACTCATTTCtggagattgtgtgtgtgtatggctaCTCGCTTTCCATCTATATCCCTGCTGTGGTTTTGTGGATTATACCCAGTGAAGGACTCAGATGGTGCTCCATTGTTTTGGCTCTGTGTCTGTCAGGGTCTGTGCTGATGTTAACGTTTTGGCCGGCTATCCGGGATGACCACCCACGGGTGGTTCTGGCCGTTACTGTCACTATTGTGACGCTTCACGTTTTGCTTGCAGTTGGCTGTAAGGCGTATTTCTTCAGCACATACGACTCTTCAGCACCTGCGGCGAGTCCGGCACCGGCAGCGGCTGCGGCCAAGGTCGTACTGACCACACAGGCACATTGAGCTTCAGCTTTAGCTTCTCCTGTTGCCTGATTGGCCGGGTCAAGTTTCTGCCTCATGAGGTCATGGACCATCTGGATTTCAGCAGATTAGCGTCCCGCGGGTTCAGCTGTGAGGTTACCGACCCGAGACCATCACTGACACACTTATgattcctgtgtgtgtgtgtgtgggtgtgtgaaagtgtgtttgggtgtgtgggTGGTTAGCATTTTTACCTGACTTGTGGAATGTATGCTTTGATTGATCGCGAGTGTTCTGTTACTGGGTAGACTGGGTTAAGGATATATAACACTGTATGTAGCGGCGTCTGAAATATTGATGTTATAATTGAACTTGAGATGTCCACTAAAAGGGCCATTCTTCTGTTTCAGCTGATTGTGACTGGTACCTACACTAGATTACTGTTTCTCAGCCCTGGTCCTGGAGGAAGCCTGCTCTGCAATATTTAGGATGCTCTGGACTTTCAGACTCTTCAGTTTGGTTGTTAAAGATGCCGCGAATCACGGTCCAAATCACAGGACCAGAATTTGGTCAGAACGATAGAGGTGGTCTCAGCCCATATCTACTGAATCATGGTTTGATTAGTTTGCAGtggaaaaacacttttctagatgattcagactttcagaccaattacagaaagTTGAGTCAGGCTATTATCACCCAGTAaataatagaagaagaaaaagaagcagtgttGTGCAGGCCTTTCTCCCAGCAGTACAACAGGTTACAGTGATGATACACAACAgtaattgtaaaataattaaatctgaATTTCCAGATGGGTGATTTTCAGGTATGGATAGCTTCCAGAAACATTCAGGACAGTTCTGATACGGTTGTGAAAGTGAGTCTGGAGCTATATAAAAACCATCAAACATTTTGGAAGTTGTTTTGAActgtaacatttatttgtatCATGTAATAGTTTAAGGTTTAAGCCCTAAAAAGCCCTGGAACCAGGTCTTCAATAATAGTTCAGTTGACCCAGATATTGATACCTTTTTGCGTCCTTTAGGGAGGTAATAAAGTAGGATGAGAAACTGATACAGGACTACAGACTGTTATTATAGAACTATGAAGTGTTCTCTATGATCagtgaagctaaaaaaaatagattttgtgtagaaacaaggtggtaataatattattattaattggtTAATGAATCACGGTCTGATTCGTTCGCAGTGGAAAaccacttttctagatggttcggaatttcagaccaattacagaaagTTGAGTCAGGCTATTATATCCcagtaaataatagaaaaaaaaaaaaaaaagaagcagtgttgtgccaaaatccaaGCGCCCTTGGCGTTCAGGCATGTACCTATACTGCTGTGGGACAACAGATTTtactggtgattctgtatctactgtaactgtagattaacccttattataaacagaaataaaggaaaTCTGAGTGGAATCTAACACACTTATTCTGCTGTGGGACTCATCTGCAATGGAAGTGAGTTCTGgcagaattcggcacaacacctggaaaagcaGTTTACCAATCTGATAATGTTATTCAAAAACCAGTGTAAAGTTCGATATACGGCGACTCCGCCCATGTAGGTGATGATGACTGAACCTAATAAAAACTGCAGTGACAAACCAAGACTAGCCAAATTAAATTTTTTCCCAGCTCCAAACACATCTGATTCAGCCAGTCAGCTCTTTAACAACCCATTCCAGAGTTACTAGGGAATAGTTAAAGCAGGGAATCCAGTAAAATGTGCAGAGCAGGAtgcctccaggaccaggatttAGAAACACTGCTGTGAACGGCACTGTATTTATCTATAGCACAAATATATTAGCCACCTGCAGTATGTagaacatatttaataaaacccCAAATCGGAAAAGGTCGGGAAGGGTATGggaaatgcaaatatattatccttttttttatttttatttttctatttcagacagtatgaacccaatgTGTCAATGTTACTCTTCTCAacttgattttattcattattttacattcgttcctgcatttcagacatgcaacatatttataaaacgtTATGAAAAAGTCCTTGAAAGTTTTTAAAGGGAAAATGTTGGGTTCACACTTTtagtcataaaaaaataaaagccaaaataaaatgtaa

Function

symbol description
yipf1 Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in late endosome membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human YIPF1 (Yip1 domain family member 1).

NR:

description
protein YIPF1-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU795 True 3168 TUCP 0.41 7 1864515 1873127
XM_022670226.1 False 2833 mRNA 0.42 7 1864847 1873124

Neighbor

gene id symbol gene type direction distance location
LOC103041746 LOC103041746,LOC108432452,LOC107602511 coding downstream 1788 1860413 ~ 1862727 (-)
ndc1 ndc1 coding downstream 6291 1835741 ~ 1858224 (-)
LOC103044599 glis1,LOC107602512,LOC106952155 coding downstream 31483 1796561 ~ 1833032 (-)
LOC103045337 NA coding downstream 72387 1783204 ~ 1792128 (-)
best4 best4,LOC106569841,LOC108262062 coding downstream 91624 1764264 ~ 1772891 (-)
LOC103038761 NA coding upstream 79611 1952738 ~ 1967670 (-)
LOC103039897 NA coding upstream 125973 1999100 ~ 2005172 (-)
LOC103039590 LOC103039590 coding upstream 137142 2010269 ~ 2011178 (-)
LOC103039280 stk25b,LOC108432500,LOC107585675,LOC107722570,LOC108278137,LOC107693719,LOC107589848 coding upstream 165759 2038886 ~ 2052143 (-)
thap4 thap4 coding upstream 194851 2067978 ~ 2073643 (-)
G589 rps8,rps8a,LOC107674081,LOC107688507,LOC107602544 non-coding downstream 100892 1757980 ~ 1763623 (-)
G504 NA non-coding downstream 108201 1754379 ~ 1756314 (-)
G502 hectd3,LOC107729394 non-coding downstream 110661 1751182 ~ 1753854 (-)
G496 hectd3 non-coding downstream 126598 1736394 ~ 1737917 (-)
G471 NA non-coding downstream 326456 1487880 ~ 1538059 (-)
G608 NA non-coding upstream 4382 1877509 ~ 1894453 (-)
G616 sept2 non-coding upstream 143429 2016556 ~ 2035389 (-)
G644 NA non-coding upstream 193448 2066575 ~ 2067409 (-)
LOC111192756 NA non-coding upstream 203948 2077075 ~ 2079605 (-)
G653 NA non-coding upstream 219296 2092423 ~ 2092992 (-)
LOC111197534 NA other downstream 1008355 855579 ~ 856160 (-)
LOC103037308 LOC108440474,LOC108278112,LOC107585786,LOC107669856,LOC107745208 other downstream 1193800 589669 ~ 670715 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other upstream 47353 1920480 ~ 1928255 (-)
znf414 NA other upstream 550586 2423713 ~ 2434401 (-)
G807 NA other upstream 677089 2550216 ~ 2600511 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other upstream 1037627 2910754 ~ 2970340 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other upstream 1521077 3394204 ~ 3445386 (-)

Expression


Co-expression Network