G644


Basic Information

Item Value
gene id G644
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 2066575 ~ 2067409 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU841
atagatcactctgtgtgtaatacatctatataatatgagtttcacattttaaactcgattactaaaataaagtaaaccaaaaaaaaaagaacattctgGAAACAATGATTACTTttcattcaaaataaaaatgttgacaaCACATATAATTATACATGGGGTTAATTATTGTTAGTCGTTTCcgtcatgcaaaaaccttgcatctgcatttttgtagtttttcccTCTAAAATGAATCTGGCAGTTATTCTTTGCAATATCTgaattttatgatgaatgggaccaatagaaatgctcctaaattacagcatttttacattgacttctattgctGTTTTTAGCGGTATAAAGTTTTTGCATGACCATGGCAGTATGCTGGATTAAGGCGTGGATCAATACATTTAAAGTACAAAACTCCTGTTGCGTGCATTTACATACAGTatcggtcaaaagtttggacacacctccttCTATACATTGATTTGTactattttctacattgtagattaatattgaagacatcagaactataaaggaacacttGGAATGGTATATTAAGGTATATTAAGTGTTGTGTTGGTTTTAGGTCAGGATcctagacagggattaagcctagtcttaaacaacacagctttttaaatagtgctgtgtattggcaagaatttGGTGATTATGATACAgatcacaatacaggggttacaattcaATAAATCACaacatattgcaatactgtaagcaaacACTTTAGAAAGAAGCATCAtaatagtataaaaacacatttataaattttaaatccattgtcAGTACATTGTGATCAAACAGAGTAAAAAACACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU841 True 835 lncRNA 0.11 1 2066575 2067409

Neighbor

gene id symbol gene type direction distance location
LOC103039280 stk25b,LOC108432500,LOC107585675,LOC107722570,LOC108278137,LOC107693719,LOC107589848 coding downstream 14432 2038886 ~ 2052143 (-)
LOC103039590 LOC103039590 coding downstream 55397 2010269 ~ 2011178 (-)
LOC103039897 NA coding downstream 61403 1999100 ~ 2005172 (-)
LOC103038761 NA coding downstream 98905 1952738 ~ 1967670 (-)
LOC103041746 LOC103041746,LOC108432452,LOC107602511 coding downstream 203848 1860413 ~ 1862727 (-)
thap4 thap4 coding upstream 569 2067978 ~ 2073643 (-)
LOC103036651 LOC103036651,LOC108432502,LOC105899541,LOC105028795,LOC108278136,LOC107718120 coding upstream 36061 2103470 ~ 2112159 (-)
LOC103037376 NA coding upstream 257197 2324606 ~ 2372955 (-)
LOC103036044 LOC108432506 coding upstream 308838 2376247 ~ 2395365 (-)
LOC103037050 LOC108432507 coding upstream 337954 2405363 ~ 2422641 (-)
G616 sept2 non-coding downstream 31186 2016556 ~ 2035389 (-)
G608 NA non-coding downstream 172122 1877509 ~ 1894453 (-)
G589 rps8,rps8a,LOC107674081,LOC107688507,LOC107602544 non-coding downstream 302952 1757980 ~ 1763623 (-)
G504 NA non-coding downstream 310261 1754379 ~ 1756314 (-)
G502 hectd3,LOC107729394 non-coding downstream 312721 1751182 ~ 1753854 (-)
LOC111192756 NA non-coding upstream 9666 2077075 ~ 2079605 (-)
G653 NA non-coding upstream 25014 2092423 ~ 2092992 (-)
G655 NA non-coding upstream 28811 2096220 ~ 2101575 (-)
G671 NA non-coding upstream 78019 2145428 ~ 2226561 (-)
G684 NA non-coding upstream 118698 2186107 ~ 2193511 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other downstream 138320 1920480 ~ 1928255 (-)
yipf1 yipf1 other downstream 193448 1864515 ~ 1873127 (-)
LOC111197534 NA other downstream 1210415 855579 ~ 856160 (-)
LOC103037308 LOC108440474,LOC108278112,LOC107585786,LOC107669856,LOC107745208 other downstream 1395860 589669 ~ 670715 (-)
znf414 NA other upstream 356304 2423713 ~ 2434401 (-)
G807 NA other upstream 482807 2550216 ~ 2600511 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other upstream 843345 2910754 ~ 2970340 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other upstream 1326795 3394204 ~ 3445386 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other upstream 1814961 3882370 ~ 3909671 (-)

Expression


Co-expression Network