LOC111192756


Basic Information

Item Value
gene id LOC111192756
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 2077075 ~ 2079605 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU849
CAAAGTGGCGGACTAGGTTTCCTCCTATCAAAATAAATCCTTTCAAAGGACCAACTGAAAACCCATTTGAGGTCAGGAGGCTGAAAGAGGAGCAGCCAAAGTGGCTGGAACGTACTGAAGCATGGGCAGCTCACAATAAGCAGTACAGTGGGCGTCTTCGCCCAGAGGCTCGCCTGGAAAACCCATTTGCACAAGGCATTAGACACAAAGAGGCACTCACCAACCTCAGCAGAAACAAGACAGAGTTGTTTCAGACTAAAACTGGCACCGTAATGCCCCCAGTTATGCCACCGGTGAGACCACCAGTGAGATTGGTGCCACTGCAAAAAGTGACCCGAGGAAACGTCCATTCTCCCTCTCGTTAATTCAGCATTCCTCCGCCTgcctctcctcttcctctcccctACACCCCCCAAGTCCTCACCTTATATTACAAGaagcaatgcaaaaaaaaaaacagaaaacaaacaaaaaaactttaattcatAATAGCTAAATA
>XR_002650137.1
TCCCCTTTCTAGGATCGTACTGAAGGTCAGGCAGCACACAGTAGGCTGTACAGTGTATGTCCTCAGGCCAGTTACCAGACCTTCCTGCAGCCAACATGGTCCGGAGAGCCTGCACGTTCTAAATATGTGCAGAGGAACCAGGTCCCAGAGCCTCACCTGGAAAACCCATGTGAAACAAAGTGGCGGACTAGGTTTCCTCCTATCAAAATAAATCCTTTCAAAGGACCAACTGAAAACCCATTTGAGGTCAGGAGGCTGAAAGAGGAGCAGCCAAAGTGGCTGGAACGTACTGAAGCATGGGCAGCTCACAATAAGCAGTACAGTGGGCGTCTTCGCCCAGAGGCTCGCCTGGAAAACCCATTTGCACAAGGCATTAGACACAAAGAGGCACTCACCAACCTCAGCAGAAACAAGACAGAGTTGTTTCAGACTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU849 True 499 lncRNA 0.43 4 2077075 2079605
XR_002650137.1 False 435 lncRNA 0.50 4 2077805 2079170

Neighbor

gene id symbol gene type direction distance location
thap4 thap4 coding downstream 3432 2067978 ~ 2073643 (-)
LOC103039280 stk25b,LOC108432500,LOC107585675,LOC107722570,LOC108278137,LOC107693719,LOC107589848 coding downstream 24932 2038886 ~ 2052143 (-)
LOC103039590 LOC103039590 coding downstream 65897 2010269 ~ 2011178 (-)
LOC103039897 NA coding downstream 71903 1999100 ~ 2005172 (-)
LOC103038761 NA coding downstream 109405 1952738 ~ 1967670 (-)
LOC103036651 LOC103036651,LOC108432502,LOC105899541,LOC105028795,LOC108278136,LOC107718120 coding upstream 23865 2103470 ~ 2112159 (-)
LOC103037376 NA coding upstream 245001 2324606 ~ 2372955 (-)
LOC103036044 LOC108432506 coding upstream 296642 2376247 ~ 2395365 (-)
LOC103037050 LOC108432507 coding upstream 325758 2405363 ~ 2422641 (-)
LOC111193163 NA coding upstream 460211 2539816 ~ 2542341 (-)
G644 NA non-coding downstream 9666 2066575 ~ 2067409 (-)
G616 sept2 non-coding downstream 41686 2016556 ~ 2035389 (-)
G608 NA non-coding downstream 182622 1877509 ~ 1894453 (-)
G589 rps8,rps8a,LOC107674081,LOC107688507,LOC107602544 non-coding downstream 313452 1757980 ~ 1763623 (-)
G504 NA non-coding downstream 320761 1754379 ~ 1756314 (-)
G653 NA non-coding upstream 12818 2092423 ~ 2092992 (-)
G655 NA non-coding upstream 16615 2096220 ~ 2101575 (-)
G671 NA non-coding upstream 65823 2145428 ~ 2226561 (-)
G684 NA non-coding upstream 106502 2186107 ~ 2193511 (-)
G694 NA non-coding upstream 159837 2239442 ~ 2246806 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other downstream 148820 1920480 ~ 1928255 (-)
yipf1 yipf1 other downstream 203948 1864515 ~ 1873127 (-)
LOC111197534 NA other downstream 1220915 855579 ~ 856160 (-)
LOC103037308 LOC108440474,LOC108278112,LOC107585786,LOC107669856,LOC107745208 other downstream 1406360 589669 ~ 670715 (-)
znf414 NA other upstream 344108 2423713 ~ 2434401 (-)
G807 NA other upstream 470611 2550216 ~ 2600511 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other upstream 831149 2910754 ~ 2970340 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other upstream 1314599 3394204 ~ 3445386 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other upstream 1802765 3882370 ~ 3909671 (-)

Expression


Co-expression Network