LOC103040551


Basic Information

Item Value
gene id LOC103040551
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 9812342 ~ 9814698 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229238.2
TCAATTGTCAGTAAATCAGCTCAGACTTAAAAGCACATTTGTTATCTGAAACTTGCTGTGCGAGATTGTTGTTATGCTTTAGAGAAAACCGGTTGTGTGACTCCGGATAATAAAGGTAGCCAGCCTCATACAGACCGACCAGAACAGCTGCCAACATGAAGCTTCTGGTGTGTGCCCTCGTACTGGTGCTGGTGTGCAGTGAGACTGTGCATTCCCTCAAGTGTTTCACTTGTGTGAACGGGAACTGTAAGACTGCTACAGAATGCCCAGAATCAAGCAACTTCTGCAAAACCGTGGTGGGATatgaCTCCCTCAGTCGGACCTGTGAGGAGTTTTGTGTGCCTGGAGTTAATATCTACTGCTGCCAGGAGGATCTGTGTGGATGAGACCCAGCTAACCTCTGCAGTACTGCTGAATCATGAGCTTAATCAAagagttataataataataaccatatAAAAATGACCATAATCCTCCTAATTAACTGTATCCAATGATTCCTAATGCTTGAATAAAAGCCTCCAGCATCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229238.2 True 531 mRNA 0.44 3 9812342 9814698

Neighbor

gene id symbol gene type direction distance location
LOC103040232 samsn1 coding downstream 9662 9766040 ~ 9802680 (-)
LOC103039097 serpinh1b,LOC103039097,LOC108433001,LOC108278262,LOC107588392,LOC107756564,LOC107666206 coding downstream 199624 9606916 ~ 9612718 (-)
LOC103031688 nos2,LOC108432969 coding downstream 879232 8911820 ~ 8933110 (-)
LOC103026958 nos2,LOC108432969 coding downstream 921883 8867321 ~ 8890459 (-)
mrps23 NA coding downstream 949552 8857326 ~ 8862790 (-)
LOC103040855 NA coding upstream 2964 9817662 ~ 9819909 (-)
LOC111195496 tekt1 coding upstream 694342 10509040 ~ 10512788 (-)
LOC111195508 NA coding upstream 938406 10753104 ~ 10756886 (-)
LOC103043674 dhr13,LOC108427000,LOC107685074,LOC107589701,LOC107756995 coding upstream 1257700 11072398 ~ 11076365 (-)
LOC103042223 cryba1a,LOC103042223,LOC108426912,LOC107743738,LOC108278232,LOC105898204 coding upstream 1266150 11080848 ~ 11083883 (-)
G2677 NA non-coding downstream 25294 9786519 ~ 9787048 (-)
G2519 gdpd5b,LOC103039705,LOC108433002,LOC105901430 non-coding downstream 101819 9634157 ~ 9710523 (-)
G2516 NA non-coding downstream 187622 9624501 ~ 9624720 (-)
G2479 NA non-coding downstream 341025 9471093 ~ 9471317 (-)
G2477 NA non-coding downstream 346861 9464092 ~ 9465481 (-)
G2679 NA non-coding upstream 32429 9847127 ~ 9847841 (-)
G2689 NA non-coding upstream 224853 10039551 ~ 10101485 (-)
G2696 NA non-coding upstream 305853 10120551 ~ 10122688 (-)
G2712 NA non-coding upstream 383449 10198147 ~ 10284400 (-)
G2720 NA non-coding upstream 403013 10217711 ~ 10244181 (-)
hspa13 hspa13,LOC107682527,LOC107666191,LOC107714176 other downstream 56587 9746622 ~ 9755755 (-)
LOC103037880 LOC108432996 other downstream 678771 9113479 ~ 9133571 (-)
nlk nlk2,nlk,LOC107682651,LOC107666197,LOC106581270 other downstream 720230 8953877 ~ 9092112 (-)
LOC103031123 LOC108411357 other downstream 4091234 5703706 ~ 5721108 (-)
LOC111193783 LOC108442858 other downstream 5491002 4276909 ~ 4321340 (-)
rap1gap2 rap1gap2 other upstream 432767 10247465 ~ 10461860 (-)
G2783 NA other upstream 767591 10582289 ~ 10582747 (-)
LOC103025442 lhx1a,LOC108427001,LOC108277614,LOC107743643,LOC105897175,LOC107669762,LOC107589700 other upstream 840160 10654858 ~ 10684465 (-)
sarm1 sarm1,LOC107669752,LOC107743642,LOC107756984,LOC107685076 other upstream 1466511 11281209 ~ 11293882 (-)
LOC111192956 LOC108412924,LOC108444125,LOC108444119,LOC108416439 other upstream 2109304 11924002 ~ 11940744 (-)

Expression


Co-expression Network