LOC103040855


Basic Information

Item Value
gene id LOC103040855
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 9817662 ~ 9819909 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229239.3
ACCGGTTGTGTGACTCCGGATAATAAAGGTAGCCAGCCTCATACAGACCGACCAGAACAGCTGCCAACATGAAGCTTCTGGTGTGTGCCCTCGTACTGGTGCTGGTGTGCAGTGAGACTgTGCATTCCCTCAAGTGTTTCACTTGTGTGAACGGGAACTGTAAGACTGCTACAGAATGCCCAGAATCAAGCAACTTCTGCAAAACCGTGGTGGGATatgACTCCCTCAGTCGGACCTGTGAGGAGTTCTGTGTGCCTGGAGTTAATATCTACTGCTGCCAGGAGGATCTGTGTGGCTGAGACCCAGCTAACCTCTGCAATTCTGCTGAATCATGAGCTTAATCAAagagttataataataataaccatatAAAAATGACCATAATCCTCCTAATTAACTGTATCCAATGATTCCTAATGCTTAAATAAAAGCCTGCAGCatcta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229239.3 True 444 mRNA 0.45 3 9817662 9819909

Neighbor

gene id symbol gene type direction distance location
LOC103040551 NA coding downstream 2964 9812342 ~ 9814698 (-)
LOC103040232 samsn1 coding downstream 14982 9766040 ~ 9802680 (-)
LOC103039097 serpinh1b,LOC103039097,LOC108433001,LOC108278262,LOC107588392,LOC107756564,LOC107666206 coding downstream 204944 9606916 ~ 9612718 (-)
LOC103031688 nos2,LOC108432969 coding downstream 884552 8911820 ~ 8933110 (-)
LOC103026958 nos2,LOC108432969 coding downstream 927203 8867321 ~ 8890459 (-)
LOC111195496 tekt1 coding upstream 689131 10509040 ~ 10512788 (-)
LOC111195508 NA coding upstream 933195 10753104 ~ 10756886 (-)
LOC103043674 dhr13,LOC108427000,LOC107685074,LOC107589701,LOC107756995 coding upstream 1252489 11072398 ~ 11076365 (-)
LOC103042223 cryba1a,LOC103042223,LOC108426912,LOC107743738,LOC108278232,LOC105898204 coding upstream 1260939 11080848 ~ 11083883 (-)
foxn1 foxn1 coding upstream 1300898 11120807 ~ 11135302 (-)
G2677 NA non-coding downstream 30614 9786519 ~ 9787048 (-)
G2519 gdpd5b,LOC103039705,LOC108433002,LOC105901430 non-coding downstream 107139 9634157 ~ 9710523 (-)
G2516 NA non-coding downstream 192942 9624501 ~ 9624720 (-)
G2479 NA non-coding downstream 346345 9471093 ~ 9471317 (-)
G2477 NA non-coding downstream 352181 9464092 ~ 9465481 (-)
G2679 NA non-coding upstream 27218 9847127 ~ 9847841 (-)
G2689 NA non-coding upstream 219642 10039551 ~ 10101485 (-)
G2696 NA non-coding upstream 300642 10120551 ~ 10122688 (-)
G2712 NA non-coding upstream 378238 10198147 ~ 10284400 (-)
G2720 NA non-coding upstream 397802 10217711 ~ 10244181 (-)
hspa13 hspa13,LOC107682527,LOC107666191,LOC107714176 other downstream 61907 9746622 ~ 9755755 (-)
LOC103037880 LOC108432996 other downstream 684091 9113479 ~ 9133571 (-)
nlk nlk2,nlk,LOC107682651,LOC107666197,LOC106581270 other downstream 725550 8953877 ~ 9092112 (-)
LOC103031123 LOC108411357 other downstream 4096554 5703706 ~ 5721108 (-)
LOC111193783 LOC108442858 other downstream 5496322 4276909 ~ 4321340 (-)
rap1gap2 rap1gap2 other upstream 427556 10247465 ~ 10461860 (-)
G2783 NA other upstream 762380 10582289 ~ 10582747 (-)
LOC103025442 lhx1a,LOC108427001,LOC108277614,LOC107743643,LOC105897175,LOC107669762,LOC107589700 other upstream 834949 10654858 ~ 10684465 (-)
sarm1 sarm1,LOC107669752,LOC107743642,LOC107756984,LOC107685076 other upstream 1461300 11281209 ~ 11293882 (-)
LOC111192956 LOC108412924,LOC108444125,LOC108444119,LOC108416439 other upstream 2104093 11924002 ~ 11940744 (-)

Expression


Co-expression Network