LOC103041159


Basic Information

Item Value
gene id LOC103041159
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 17882776 ~ 17914128 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229574.3
GGGTGGCTTTAGTAGTCATTGTTAGGCGGCGTGTCTCACAGCGGACTACtggcggagtgtgtgtgtgtgtgtgagagtgtgtttgcgcgagagaaagagagagatagagaaagagaaagagagaaagagagagaaagagagagacagcgcactcgtgtgtgtgtgggccaAGTGGAATGAGTAAAAGCATCAGACGCCTCAGCTGTTGATACAGccaggagtgtgtgagtgagtgagtgagtgtgtgagcgagagagagagagagggagagaagagagggagagagagagagagagagagagagagaagtgcaaagaggaaaagaggaagGCAAAGAAGGCGGAAAaagaaggaggaaaagaaaaaagaagggaTAGTCCAAGTATGCTGTGCTGCATAAGAAGAACGAAGCCGGTGGAGAAGAATGAAGAGGCTGACCAGGAGATCAAGCAAGATGGCACCAAACCAGAAGACAAAGCCCACAAGGCGGCCACCAAGATCCAGGCCAGCTTCCGGGGACACATAATCCGGAAAAAAATGAAGGACGACGACAAGGAGGAGGACAGTCCCGCCGCCCCGGACGAGTCAGCAGAGGCGGCTGAGGCGGCCGAGGAGGAACCCAAGGAAGGGGAggcagaggaggagaagaagaaggaggaagcCAATTCTCCAGCCACGGAGAAGCCAGCTGAGGAGGCAGGCGAGGAGAAGGCCAAGAGCCCCGTGGCCGATCCGCCCGCCAACTCTCCGGCAGCTGCCGACGAAGCCAAGGCTGAAGCCCCCGCTGCCACCTCCCCCTCAGAACCGCCCGCCAAGCAGGAGGTCAAGGAGGAGACCAAGGAAACGGAGAAACCTGGAGAGGCACCCGCCGCCACGGAGGCCGAGAAACCCGCCGAGAATGTAACCGCCGacaagaaggaggaggaggagaaggtggAAGCCAAACAAGCCGACGTGCCTGCCGCTGCTAACGAGACAGCTGATTGTGAGGATGCAAACCAAACACAAGACAAAAAAGATGCTGCAGACGAGTCCGAGGCAGCGGATGGCGCTGTTTCGGAAGCGGGGAAGGACGAGGAGAAGGACGAGAATGCTTAAGAATACGACAGAGTTGTAAAATGGTAACGAATACTTAGGAAAGGTTGCTCTTTGACCTCTGATTGTGGAGAcggtcagtttttatttgtttgtcctCTTTTTTTCGTGTGGCAATGATTTTTCTTACATCTTTGGGGTGGGGGGAGGCGGGGGGAGTCTGGGGTGGGGGAGTTTCCATATGCAACTTGCGGCTCAAGCTAGCAGTGAAGTGATCTGGTGCTGCTTCAACACGCGAGAGTCCGAACCCCCGTACTTTCATCAACTTCACCAAAGGACAGACGACACACTTTCTTACTCCTATAGCCGACCTGTTTGAACCTGGTTTGCATTTAGAGTtatctctatcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcactcactttcagagacacaaacacacaccttttCCATTGACCATAGTAGTAGTGCACTGCTATATTTAACAGGGAGGAGTATTATTCCCTCCCAGTGTTTCTATGTTGATGCAATTGTTTTGGCCAGCATTTCATGGATAGCTTGAACCCATCCGACTCCTTGCATGGGAATTCCTCCTGAGTGGGGAACCTTCTCGCAGTCACGGTAACCAAAACGTGTGGCTTCTTTTTTCAATGTCCTTGGTGTTGTTATGACGGTTTGATATCAAATTGGAGATTATTCCTGCGCTgaagttaaaaatgaaaagagaaaaagtcaAAAACCAacaactaaaaagaaaaaaaatgattaaaaactcAGCCTTTCCTATGTTCACGTGAGTGCAATGTCGAGTTTGAATCTGAAAAGGAGTtcaattgtgaaaaaaagtttcagtgtctgttttcaaaataaagaaatgtgcCAATTATCATCACAA

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0042246 tissue regeneration biological_process
GO:0040008 regulation of growth biological_process
GO:0007399 nervous system development biological_process
GO:0032584 growth cone membrane cellular_component
GO:0031527 filopodium membrane cellular_component
GO:0045202 synapse cellular_component
GO:0030054 cell junction cellular_component
GO:0005516 calmodulin binding molecular_function

KEGG:

id description
K20041 GAP43; neuromodulin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229574.3 True 1991 mRNA 0.50 3 17882776 17914128

Neighbor

gene id symbol gene type direction distance location
zc3h4 zc3h4,LOC107683834,LOC107601737,LOC107690443,LOC107718283,LOC107585556 coding downstream 1196592 16674101 ~ 16686184 (-)
LOC103043199 NA coding downstream 1224096 16656235 ~ 16658680 (-)
LOC103044128 ckm,ckmb,LOC107690449,LOC107718278,LOC107601735 coding downstream 1259792 16619111 ~ 16622984 (-)
LOC103030646 NA coding downstream 1335036 16542948 ~ 16547740 (-)
LOC103047885 NA coding downstream 1431774 16439618 ~ 16451002 (-)
mpzl3 NA coding upstream 30946 17945074 ~ 17975882 (-)
LOC103039101 tmem25 coding upstream 133409 18047537 ~ 18060269 (-)
sik3 sik3 coding upstream 153751 18067879 ~ 18118621 (-)
LOC107196958 NA coding upstream 261646 18175774 ~ 18181003 (-)
cep164 cep164 coding upstream 273718 18187846 ~ 18202965 (-)
G4499 NA non-coding downstream 31333 17847759 ~ 17851443 (-)
G4480 NA non-coding downstream 515539 17366847 ~ 17367237 (-)
G4479 NA non-coding downstream 520540 17361813 ~ 17362236 (-)
G4478 NA non-coding downstream 544508 17338051 ~ 17338268 (-)
G4338 NA non-coding downstream 724925 17157619 ~ 17157851 (-)
G4513 NA non-coding upstream 89963 18004091 ~ 18009184 (-)
LOC111192371 NA non-coding upstream 116869 18030997 ~ 18034451 (-)
LOC111192372 NA non-coding upstream 120344 18034472 ~ 18040751 (-)
G4619 NA non-coding upstream 149033 18063161 ~ 18066938 (-)
G4638 NA non-coding upstream 216713 18130841 ~ 18132384 (-)
ercc2 ercc2,LOC107743694,LOC107601732 other downstream 1228808 16644492 ~ 16653968 (-)
LOC103022652 LOC103022652,LOC108425821,LOC108277503 other downstream 1600144 16278005 ~ 16282632 (-)
slc6a4 slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 other downstream 3411024 14380755 ~ 14471752 (-)
G3612 NA other downstream 3598551 14283623 ~ 14284225 (-)
LOC111189390 NA other downstream 3749539 14124173 ~ 14133237 (-)
LOC103040336 mpzl2 other upstream 69757 17983885 ~ 17998749 (-)
G4621 NA other upstream 116234 18030362 ~ 18040766 (-)
LOC103031959 NA other upstream 282452 18196580 ~ 18226004 (-)
LOC103038769 NA other upstream 1725237 19639365 ~ 19648822 (-)
LOC103038464 NA other upstream 1738658 19652786 ~ 19655913 (-)

Expression


Co-expression Network