LOC103024995


Basic Information

Item Value
gene id LOC103024995
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11714121 ~ 11726198 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232340.3
GCACAGAGGCCTCAGCTCCCCACTGTCTAactactgactgactgactggctgaCAGATGCCTGAACTGCACAGGTCAACTTTACTTCCAGAAATGACCTTGTTTCAGGATAACATGCACACATCAATGAATTCTGCACATATATCTGATTCAGCAACATCCATTCACTTCAACAGAAAGCTCCTgttctcagccaatcaaaaaTTTATCTCCTCTCGGGGTCATAGGCTCAGCCGGCTGAATACAACTGCCAGTCagaccgacttgtggaacataAAGCCCCCTGACTTTACCCCGAAACTGTACAGGTCACTAAGCTTACCACAGATTAAAAAGAAAACCCTTGACCCGGCCATACCCAGAGAGAGTCTGAGACAAACATCTCTATTCCTTTTACCAAACCTGGAAAAGAAGATGACTGAACCATCGTTTATCAGGTCGTATAAAGCCCCTGACCTGCTGGAGTCACAGCTGCTGTTTGTGAAGTCAGGACAGTATCCCAACCTTCCTTACAAAAACCCAAAACCCCACAATTTTAGACCATGTGCTGACAACATGCCTGATATGGTCACCACCATAGAAAAGGATCCTGGGAATTTGAAGTTTAAGTCTCAGTACTTGGAATCAAAAATTGTTGAACCCAGCCTTTGTCAGAGAGAAGAACTGAGAAAAATAGACACCTTCAAACCAGCAGAACTCAAGTGGGATTCCAAACTCATACTGCCAAAATCCCCCTGGCCACCGAAGTCAGCTTCATACACGagGCATCGGCGCAGAAGAGGAGTGTACAGTGCTTTTATGGATCGTGTGGAGGAGAAGCTCACCAGGTCTTGGATGAAAGAATAATGAgacaaaatcattttaaaaaccaCAGTAGAGCTGTGAAGTGGACTGTAGAAGGAATTTAGACATTTTAAGTGAGATTCCAAACCACAGGAAGTGGAAGCTTTCAGATAAAAGGGAACTTCAGAGAACATAGGAAGTAGTGAATATCAGTTTATTACTTCATatgaaactgattttttttactcatctGTCACAACACAATGGAAACATCACATCAACCTGTTGTATACCcataaaatcacatttatttccattttacatacaaaaaatgATAGACTGCTGCAGCTCATTTGTTTGCTAGTTACTTTAGCAGGCAAAGAAGCTGCTGAAGAATATTGTTAACCCAGCTAGGGCTGgacaaaatatgaatatgaatagaAATTAATAAGTGGGGATTTACCTAAATGATGTATATTCCCTTAGCCAGTATTAAATACTTAGTATGTACGAAATGCTTTGGCACTGCTTAAGAACCCTGTGGAATGGAATTCAACTTGTGTTACATTGGTCTTACAGTGGTCCTTTCTTTCATAATAAAATGTCAGCTTGTTTGCACTGTAGTCACCGCaggtacaaaataaaagtcaaatcaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232340.3 True 1438 mRNA 0.41 5 11714121 11726198

Neighbor

gene id symbol gene type direction distance location
arl4a arl4a,arl4aa coding downstream 850 11709625 ~ 11713271 (-)
lrrc72 NA coding downstream 405449 11304590 ~ 11308672 (-)
foxn1 foxn1 coding downstream 578819 11120807 ~ 11135302 (-)
LOC103042223 cryba1a,LOC103042223,LOC108426912,LOC107743738,LOC108278232,LOC105898204 coding downstream 630238 11080848 ~ 11083883 (-)
LOC103043674 dhr13,LOC108427000,LOC107685074,LOC107589701,LOC107756995 coding downstream 637756 11072398 ~ 11076365 (-)
LOC103030898 LOC108426917,LOC107588234,LOC106582211,LOC107752288,LOC107683449 coding upstream 41357 11767555 ~ 11777303 (-)
tmem106b tmem106b coding upstream 51380 11777578 ~ 11787142 (-)
LOC103031554 zgc:63694,LOC108426967,LOC107752277,LOC107699226,LOC107555275,LOC108278095,LOC107728169,LOC107592659,LOC107699183 coding upstream 220272 11946470 ~ 11976692 (-)
gbe1 gbe1,gbe1b,LOC107752276,LOC102793958 coding upstream 291817 12018015 ~ 12214741 (-)
LOC103022193 LOC107699842,LOC107592657,LOC107555278 coding upstream 889456 12615654 ~ 12626454 (-)
G3013 NA non-coding downstream 247572 11462660 ~ 11466549 (-)
G3010 NA non-coding downstream 288863 11424634 ~ 11425258 (-)
G2897 NA non-coding downstream 552048 11161827 ~ 11162073 (-)
G2888 NA non-coding downstream 596158 11116380 ~ 11117963 (-)
G2881 unc119,LOC103043060 non-coding downstream 601315 11092170 ~ 11112806 (-)
G3055 NA non-coding upstream 5317 11731515 ~ 11754015 (-)
G3062 NA non-coding upstream 29097 11755295 ~ 11760809 (-)
G3066 NA non-coding upstream 36171 11762369 ~ 11762575 (-)
G3067 NA non-coding upstream 36436 11762634 ~ 11762984 (-)
G3053 lsr non-coding upstream 64861 11791059 ~ 11797484 (-)
sarm1 sarm1,LOC107669752,LOC107743642,LOC107756984,LOC107685076 other downstream 420239 11281209 ~ 11293882 (-)
LOC103025442 lhx1a,LOC108427001,LOC108277614,LOC107743643,LOC105897175,LOC107669762,LOC107589700 other downstream 1029656 10654858 ~ 10684465 (-)
G2783 NA other downstream 1131374 10582289 ~ 10582747 (-)
rap1gap2 rap1gap2 other downstream 1252261 10247465 ~ 10461860 (-)
hspa13 hspa13,LOC107682527,LOC107666191,LOC107714176 other downstream 1958366 9746622 ~ 9755755 (-)
LOC111192956 LOC108412924,LOC108444125,LOC108444119,LOC108416439 other upstream 197804 11924002 ~ 11940744 (-)
G3297 sacs,LOC107593479,LOC107740366,LOC107670382 other upstream 1013946 12740144 ~ 12758513 (-)
sgcg sgcg other upstream 1032868 12759066 ~ 12781165 (-)
LOC111197384 NA other upstream 1404014 13130212 ~ 13135641 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other upstream 1818302 13544500 ~ 13572372 (-)

Expression


Co-expression Network