tmem106b (tmem106b)


Basic Information

Item Value
gene id tmem106b
gene name tmem106b
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11777578 ~ 11787142 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232341.3
GCGTGGCTCAGTGGGTTAAGGGAGACCGTGGTGCTGTTTGGGATTTAGGGACAGAAAGTCTGAACCGCTGCTGTATATTAATCGTAACTCAGATAATTCAGCCATGGGGAAGTCTCTCTTCTCTTTGCTGAAGCACAAAAGCGAGGGTCGTGAGGATCTGAAGCCGAAGGAGCCTGACTCAGACACAGATGAGGACAAACACGATATTTCCCAGTTCCCGTATGTTGAATTTACAGGCAGGGACAGTGTGACATGTCCTACTTGTCAAGGCACTGGAAGGATACCAAGAGAACAAGAAAATCAACTTGTTGCTTTGATACCATATAGTGACCAAAGACTGAGACCAAGAAGAACAAAGCTGTATGTAAGTGTGTCGGTCCTGGTGTGCCTTCTGCTTTCTGGCCTCGCTGTCTTTTTCCTGTTCCCCCGCACCATTGATGTGACCTATATTGGTGTTAGGTCTTCGTACGTTACTTTTGATACAGAGAACCGGATTGTGTATCTCAACATCACGAACACACTCAACATCACTAACAACAACTACTACCCAATACAAGTGACAAACGTCACAGCACAGGTGCAGTTCTATAAGACTGTCATTGGAAAATCGCTTGTGAGTAATGTGACCAGCATTGTACCTCTGGATATGAGACAGGTCGACTTCTCAGTTCCTACAGTCATAGCCAATGAGATTAACTATATCTTtgacTTCTGTACCATGCAGTCCATAAAAGTACACAACATTGTTGTAATGATGCAGATAACTGTGACCACTGTGTACTTCGGACATGCTGAGCAGATTTCTCAAGAAAAATACCTGTATGTGGACTGTGGTTCAAATACCACCAACCCCAATGGACACACAAACGTGATACAGTGACGCTCCTCACACTGAATCCTGACCTGCAGGACTTCTTATGTGATGCTATCTGAGACTACTGGTTCTGACTGATCTTGGTGCGTGTGCATGGCGATGCTAGAAAGATCTCATGTATTTTCTCATTATTACAGTCATGGCCGAAAGTGTTGGCACACCTGAACATTTTCCAGAAAGTTAAGTATTTCTCCCAGAAAGTTAATGCAGTTGCACATGTTTTGTTATacatgtttatttcatttatgtgtattggaacaacacaaaaaaaagaaaaaaagaatgtcTTTGCTGTCACAAAGACAtagagaacagaaagaaaaaagacaaacattGTGGAAAAATATCTCAAGGTTACAAATCATCTCCAGAGATCTTGGTATTCCCTTTTCTATGGTGCACAACATATTCAAGAAATGTACAACCCATGGCACTGTAGCAATGAGAAGTGGTGAAAGAGAAAAGTGATAAATTTAAGgtgtcctgcaggctcagggtgcatcattGTCTGCGCAAAGTATCTgtcaacattttaattaaatgaaacacTATGACAGGGGACCCAGGAGGACCCCACTGATGacacaaagacataaaaaagcTAGACTGCAGTTTACCAAAATGTATGTAAGTAAGTTCTTGTGGACAGATGAGTCCAAGATAGAGCTTTTAGGTGAAGCACATCATTCTGCTTTTAATCGAAAACAAAATGGGGTTGATTTGAAATCTGAAGAATACCAAATACCATTTTGGATTGCAATATAGGTCATAGTGTCATAGAACGCGGGGTTTGTGTCCTAGGTCATGGGTTTTCCAGCAGACATTGACCCCAGGGTCCCAgagattttaagagtttttaagtAGCCAGCAATGAGTCTGGATCTTCATTCTATCGAACACCTGTGGAGAGATCATAAAATCCTTGTTGGGAGAAAGCACGCTTCACATATTAGAGACCTGGAGCAGTTTGCAAAAGAAGACTGGCCAAAAATTCCAGTTGAGGTGCAAGAAGCTTCTTGATGGTTATAGCAAGTGATtgatttcagttattttgtCCAAAGTCTAAGCAACCAAATATTAAGCTAAGAGTGCCAATAATATTGCCTGTCTCAGTTttgtgtgaaatatatatatttttttttctttcattttttgtgttgttccaatacacacaaaggaaTATGTAATTACAATCATTTTATGGTAGAACAATTTCGGTAGAAAACACTTTCGGCCAtgactaaattattatttttatttacattattgatttattagagCAAGGTTCAGAGGAGGTAGAAGCAGAGTATGAAATGTAACAAATTCCACAGTCATGAGACCTCTTTTCACTGGCTCATTATGTCAAAAAAAAGAGCGCAATTGGACAAGAAGAAGTGTTGATTGTGAAGAAATCATGCACATATAAACTGATTTGCCAGTTATAGACTGcattcacaaaaaaactaaGCTTTTCAGAAACCACtattaactattttttcttGAAGGGCagtggagagagagattaaCACTGTAAGAAGTATTTTAGTCCAAGTCCATGCACAGCTATATGTTTttcctgaaatgtaaaatatcacTGCATtagaaataaagacatttttatatgtgtatttttacatacatatcTTGTACAAAAATACCTTTGTCTTGGcctaaaaagtatataaaacaaatctgtttaaaatatgttttaagtgtgtgtgtggggggggatGTGTTGTAATTTTCAGGTTTGCAATATTTGTAAAAAGGGAATCGACTTACTAACTGCATCTTTTGCATCTGATAATATTGTCCTTTTTTTGGGTCACTTTTGTAGTCAAGCTTGTTTTATTTACAAAGATGTGTAGAACTACTGGTTTAATTTGTGCTTTACTTTAATCAGTTTagcatattttaattaaatgttatttttaatcacTTCATAACAGTTTGagtttctgttttatatttattctatgtATTAACAATCCCTCATCTCTGTAGGGCCCCTTTCCCCCTTTTACAAAGTAGGTAATAAATACATCTGCTGTAAATGAAA

Function

symbol description
tmem106b Enables ATPase binding activity. Involved in dendrite morphogenesis and lysosome localization. Located in endosome and lysosomal membrane. Implicated in hypomyelinating leukodystrophy.

NR:

description
transmembrane protein 106B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232341.3 True 2933 mRNA 0.38 8 11777578 11787142

Neighbor

gene id symbol gene type direction distance location
LOC103030898 LOC108426917,LOC107588234,LOC106582211,LOC107752288,LOC107683449 coding downstream 275 11767555 ~ 11777303 (-)
LOC103024995 NA coding downstream 51380 11714121 ~ 11726198 (-)
arl4a arl4a,arl4aa coding downstream 64307 11709625 ~ 11713271 (-)
lrrc72 NA coding downstream 468906 11304590 ~ 11308672 (-)
foxn1 foxn1 coding downstream 642276 11120807 ~ 11135302 (-)
LOC103031554 zgc:63694,LOC108426967,LOC107752277,LOC107699226,LOC107555275,LOC108278095,LOC107728169,LOC107592659,LOC107699183 coding upstream 159328 11946470 ~ 11976692 (-)
gbe1 gbe1,gbe1b,LOC107752276,LOC102793958 coding upstream 230873 12018015 ~ 12214741 (-)
LOC103022193 LOC107699842,LOC107592657,LOC107555278 coding upstream 828512 12615654 ~ 12626454 (-)
LOC103022701 tnfrsf19,LOC108415268,LOC103474716 coding upstream 880893 12668035 ~ 12706109 (-)
ap2s1 ap2s1 coding upstream 1365877 13153019 ~ 13165105 (-)
G3067 NA non-coding downstream 14594 11762634 ~ 11762984 (-)
G3066 NA non-coding downstream 15003 11762369 ~ 11762575 (-)
G3062 NA non-coding downstream 16769 11755295 ~ 11760809 (-)
G3055 NA non-coding downstream 23563 11731515 ~ 11754015 (-)
G3013 NA non-coding downstream 311029 11462660 ~ 11466549 (-)
G3053 lsr non-coding upstream 3917 11791059 ~ 11797484 (-)
G3083 NA non-coding upstream 54057 11841199 ~ 11842185 (-)
G3149 NA non-coding upstream 97163 11884305 ~ 11884699 (-)
G3150 NA non-coding upstream 100826 11887968 ~ 11889246 (-)
G3163 NA non-coding upstream 119791 11906933 ~ 11909013 (-)
sarm1 sarm1,LOC107669752,LOC107743642,LOC107756984,LOC107685076 other downstream 483696 11281209 ~ 11293882 (-)
LOC103025442 lhx1a,LOC108427001,LOC108277614,LOC107743643,LOC105897175,LOC107669762,LOC107589700 other downstream 1093113 10654858 ~ 10684465 (-)
G2783 NA other downstream 1194831 10582289 ~ 10582747 (-)
rap1gap2 rap1gap2 other downstream 1315718 10247465 ~ 10461860 (-)
hspa13 hspa13,LOC107682527,LOC107666191,LOC107714176 other downstream 2021823 9746622 ~ 9755755 (-)
LOC111192956 LOC108412924,LOC108444125,LOC108444119,LOC108416439 other upstream 136860 11924002 ~ 11940744 (-)
G3297 sacs,LOC107593479,LOC107740366,LOC107670382 other upstream 953002 12740144 ~ 12758513 (-)
sgcg sgcg other upstream 971924 12759066 ~ 12781165 (-)
LOC111197384 NA other upstream 1343070 13130212 ~ 13135641 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other upstream 1757358 13544500 ~ 13572372 (-)

Expression


Co-expression Network