LOC103030898 (LOC108426917,LOC107588234,LOC106582211,LOC107752288,LOC107683449)


Basic Information

Item Value
gene id LOC103030898
gene name LOC108426917,LOC107588234,LOC106582211,LOC107752288,LOC107683449
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11767555 ~ 11777303 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232357.3
CAGCGGAGCGTGTGGACACTGAAAACGGAGATTCTGGTCCAGGCTGGACCAACAAGCACCTGGCGggaccatttttaaaaaattaagcagttgtTGCTGTGAAGTGACGAGAAAACCTCCGAATGTGTAGAGAATCCCTGTTCATTTCAGCGTTCTTGAGTGGTATGGCGTTTTTCTGAAAACGCGCCCCACTGTGGACGAAGATACCCGGGTTCGTGTGGACGGGGCCTTAACTACAGAGCCCCTAAAGGGCAATgggtagaaaaaaataataagaaaatgacATTGAGTTCCCTTGCAAAAGTTTTGCGTTACCTTGCGGAAGCCCTACAGGGCCATGGGTAGAAAAAACTCTCTCCTGTACCATCGGCAAAATACCAAACAAAACCTTGTtacaattttactttttataagaAGATTATAGGTGGTGGTGGCGCGTAGCtaaAATCCTCCGGCTCTGGCTCCAAAAtctactctttctttcttcctctgtcTCCAGTAGAGGTGCTGTGGAGCTTTGGAATGGTCTGTACTGGGACTACACAGCTCCTGGAGCCTCAGTCTGCTCAGTTTCTTGTGTGAGTGTGGAGACAGAACAGAATGAGCGGGTTTGGCCCTTCGTCCTCTGCGCTGCGGacacagctgctgctggccTCTCTGGCCCTGTTGGCCGGAGTGTGTCTAGGCCGATCAGATGCTCCCAGAGGAGTCTCCCTGCCTTTTGTCTTTGACGTTAAAGCAGTGTGTGATCCACCCTGTAACCATGCTGGACTCTGCATCCGAAACAACACCTGCTACTGCTCACAGGGGTACGAGGGAGAGACCTGCCAATATGCAAACTGCTATCCAAAGTGCAAAAATGGAGGGGAATGCCTTCGACCTGGAAAGTGTAGATGTCCTCCAGGATTTGGAGGAAAATACTGCCACAAAGTGATGTGTGATGGCGGCTGCTGGAATGGTGGCGACTGCACTGCTGTAAATGGAGTGGCCAAGTGCATCTGTCCGTCAAGCTGGACTGGCTCCAGATGTCAAGATGCTATCTGTCCGCAGGGCTGCAGGAATGGAGGCAGCTGCGTGGCCCCAGGAATCTGCAGCTGCCCAGAGGGGTGGCTAGGGGGAGCCTGTCACACAGCTGTGTGTAAGAAGCCATGTCGGAATGGGGGGAAGTGTGTGTCTCCTGACACCTGCCGCTGTCGCTCTCCGTTCTCCGGACCCCAGTGTGAGGAGAGGAAAAAACTCTTCTAAGCATTCTCTCCCCCACTAATACTGGTGTTTCTTCAAAATGGTGCTATTCCTTTGTGTGTTCTTTTATCTTATGATGATATCTTGTGTTATGTGTGCTGTGGAACTCAATATTTCcttttatttgcagtaactgagaaagtgtttgtgtgtgtgtgtgtttgtgagaaagAGAATTTGGATTTTAATGTACTACATATAAAAACTGATATACATATGTAAAACAACTATTATTACAGGTCTCTTGAtgtttttgtactttattttaattcagtaagAAGTTAAGGTACTTGATATAGAAGTTTACATTGGAGATAATACATATACCCAGTGTTAcctgtatatttttaaaccaataaaacaattaaacaaaa

Function

NR:

description
PREDICTED: von Willebrand factor D and EGF domain-containing protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232357.3 True 1616 mRNA 0.47 6 11767555 11777303

Neighbor

gene id symbol gene type direction distance location
LOC103024995 NA coding downstream 41357 11714121 ~ 11726198 (-)
arl4a arl4a,arl4aa coding downstream 54284 11709625 ~ 11713271 (-)
lrrc72 NA coding downstream 458883 11304590 ~ 11308672 (-)
foxn1 foxn1 coding downstream 632253 11120807 ~ 11135302 (-)
LOC103042223 cryba1a,LOC103042223,LOC108426912,LOC107743738,LOC108278232,LOC105898204 coding downstream 683672 11080848 ~ 11083883 (-)
tmem106b tmem106b coding upstream 275 11777578 ~ 11787142 (-)
LOC103031554 zgc:63694,LOC108426967,LOC107752277,LOC107699226,LOC107555275,LOC108278095,LOC107728169,LOC107592659,LOC107699183 coding upstream 169167 11946470 ~ 11976692 (-)
gbe1 gbe1,gbe1b,LOC107752276,LOC102793958 coding upstream 240712 12018015 ~ 12214741 (-)
LOC103022193 LOC107699842,LOC107592657,LOC107555278 coding upstream 838351 12615654 ~ 12626454 (-)
LOC103022701 tnfrsf19,LOC108415268,LOC103474716 coding upstream 890732 12668035 ~ 12706109 (-)
G3067 NA non-coding downstream 4571 11762634 ~ 11762984 (-)
G3066 NA non-coding downstream 4980 11762369 ~ 11762575 (-)
G3062 NA non-coding downstream 6746 11755295 ~ 11760809 (-)
G3055 NA non-coding downstream 13540 11731515 ~ 11754015 (-)
G3013 NA non-coding downstream 301006 11462660 ~ 11466549 (-)
G3053 lsr non-coding upstream 13756 11791059 ~ 11797484 (-)
G3083 NA non-coding upstream 63896 11841199 ~ 11842185 (-)
G3149 NA non-coding upstream 107002 11884305 ~ 11884699 (-)
G3150 NA non-coding upstream 110665 11887968 ~ 11889246 (-)
G3163 NA non-coding upstream 129630 11906933 ~ 11909013 (-)
sarm1 sarm1,LOC107669752,LOC107743642,LOC107756984,LOC107685076 other downstream 473673 11281209 ~ 11293882 (-)
LOC103025442 lhx1a,LOC108427001,LOC108277614,LOC107743643,LOC105897175,LOC107669762,LOC107589700 other downstream 1083090 10654858 ~ 10684465 (-)
G2783 NA other downstream 1184808 10582289 ~ 10582747 (-)
rap1gap2 rap1gap2 other downstream 1305695 10247465 ~ 10461860 (-)
hspa13 hspa13,LOC107682527,LOC107666191,LOC107714176 other downstream 2011800 9746622 ~ 9755755 (-)
LOC111192956 LOC108412924,LOC108444125,LOC108444119,LOC108416439 other upstream 146699 11924002 ~ 11940744 (-)
G3297 sacs,LOC107593479,LOC107740366,LOC107670382 other upstream 962841 12740144 ~ 12758513 (-)
sgcg sgcg other upstream 981763 12759066 ~ 12781165 (-)
LOC111197384 NA other upstream 1352909 13130212 ~ 13135641 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other upstream 1767197 13544500 ~ 13572372 (-)

Expression


Co-expression Network