LOC103030909 (LOC108443025)


Basic Information

Item Value
gene id LOC103030909
gene name LOC108443025
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 18204045 ~ 18210644 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007233940.3
CAGTGTGCTCCGCGGTGTTAGTACTCggtagttagcgttagcatgGCTGCTAGCTACcaaacacaacagcaaaaaaagtaacttAAGTGTCTAAAACGCGGCCAGTAAGCCgtgacaggctgaattatcgCTTATGTGACGAATTATAAGACATTATCAGACCAAGAAATCATCTGTTCATCTGTTGCTAAGAACAAAGCTTCATGGACTGCTGTGTTAAACAAATGGACTTGAAATCAACATTAAATCAGAATCACAGGACAAGATTGCAGATCTTGTAAAACACTTTCAAAATGTCTTGTGAATCTTTCTGGCCAGGCAAAAACATGTTTTGCAGTTGATGGCTGCTCTCGTTGGAGTGGGATGTTAACACTGGCCACAGGACCAACAGCTAATGACCAATTTcttcttaaaacatttatttaaaaccttCTACCAGTAATGTCTACGGACGGAGGAGACCGTGGGAAAGAACGAGAGCGAGGGGCACGTCCCAAGGCACGACAGAGTCGCTCGGAAGAGCGTCAGGATGGAGGGAGACGTAAAGGAGGCAGGGGGAAAAGAAAAGGCCACCTGGCCCATGAGCCGGCATCCGAGCGTCCAGTTAGTGATGGCTTTGAATACGGCGATCTCCTAAACAGATTTGAATCTGGCAGTGGAAGCTCATCTTCTCCTGTACGTGAACGCCGGTGGCGGCAGGTCCTTGGCTCGTCCAGTTCCTTGCTGTCCGAAAGAGCCTCCGCCAAACCAGCTTTATCCAATTCATTCAGTGCGGACCAGTCGGTTGCTGATACCGGTAGCAAATCTTCCGGAGGCAGCCGCACCCTCAGGCAGAAGATACAAGATGCTGTAGGCCAGTGTTTTCCCATCAAGTCTCACAGTGGAGCTTCTGCAACTGGCCTCTCTGCATCTCCTTCTACATCCTCATCCCGGAGGAAGATCCACTTAAGTGAACTGATGCTGGACAGTTGCCCATTCCCTGCTGGCTCAGACCTTGCCCAGAAGTGGTACCTCATCAAACAACACACGGCACCCATCTCTCAGCCACCTGTACTGGATTCCCTTGCTGGTGGACCAACTGCATCCTCCTCATCCACCAGCCTTGTTGCTGTGGCTGGTGCTGTGGCTGGTGCTGCAGCTTTGGTTGAAGACGAGGACGACCGCCTTCgggaaagaagaagaataagtaTTGAGCAAGGTGTCGAACCACCGCCCAATGCCCAGATCCATACATTTGAGGTGACCGCTCAAATCAACCCACTTTACAAGCTGGGGCCCAAGTTGGCGCACGGGATGAACGAGTTGTCGGGCGACGATCGTGCCACCcttcaacagcagcagatgctGCAAAGGCAGCAACAGCAACACCAGCTCCTCCTGCAAAGCTGTTTAGACACTCTTGACGAGGTTGCTGCTGCTTCAGCATCTCCCGTCGCCTCATTCTCCGCTGAGTCCCACCCAGATTCAGACTCGTCATCCTCACCATCTCCACATTCCATCGCAAGAGGGTCCCTGCCTGAAACAGATCTCCCCAAGTCTCAGGATGCTCAACATCGCATCCACACCCAGATCGACTATATCCACTGCCTGGTGCCTGATCTGCTGGAGATCACCAACCTGCCGTGCTACTGGGGCGTAATGGACCGCTATGAGGCCGAGACTCTCCTAGAGGGTAAACCCGAAGGCACCTTCCTTCTGCGGGACTCGGCCCAGGAGGACTACCTGTTCTCCGTCAGCTTCCGACGCTACGGCCGCTCTCTGCATGCCCGCATCGAACAGTGGAACCACAACTTCAGCTTCGATGTGCACGATCCAAGTGTGTTCCATGCGCCCACCGTCACGGGGCTCCTAGAACACTATAAGGACCCCAACTCCTGCATGTTCTTcgagccactgctgtccaaccCCATTCACCGCACACAGCCATTTAGCCTGCAGCATGTCTGCCGTGCTGTGATCAGCAGCTGCACCACCTACGATGGCATCAGCACCTTACCCATCCCTAATGCTCTCAAGGAGCACCTAAAGGAGTACCACTATAAGCAGAGGGTCCGTGTTCGCAGGCTTGACACGTGGTGGGAATGAAGGATGGCACTGTGCAGTAGATGCACACTGACCTTGTGCATCTAGCTTGTGACAGCAGACCCAGTCATCCTGGTCATCAACACTTGCGATTGGATTTTGAATGTTCAGGGAAAATGAATAAACTGATGAGTACTAGGGCTAGAATATTCTTGAGAACTTACAGCAGTGCACTAACACCCAGTGTTTTCATTTGTTGGTGCATGACAGGCCAGTGCTGTGTGTGCCTTTGTGCTGTCGCCACGTACTTTTGTGGCAGGAATGAAAACCGAAGTGCCACTTCTGTTACAGGAAAGatttcactttaaaatattttagctcACTTTGGGCCTCAGGTTCAAACTTCTGCGCCAAGTCAATGTGTTGTCTGCACTGTAACCTGCGCCTCTACtgtatattgccaaaagtatccactCATCTACATTGCGTTCAGCCaaggaaacccattccatgagtCTCTTGACACTCTACTGTTCTCaagctaatctgaagctacataaagtttgCAGAAAGTTGGTTCCTCTGTGttctatgctcctcagcatccgctgaccccgctctgttattttacactgacagagtgagttgctgtcgttcccagtctcttccactgtgttctaatatcactgacagttggctgtggaatatttagtagtgaggaattTTCACGACTGGATTtgtacaggtgctgcatcctatcactgtaCCACACTAGAGTTCACTGATCTCCTGAGAGCAACCCATTCTTTctctaatgtttgtagaagcagtctgcgtGACTAAGTGCTtgtttttatacacctgtgaccatggaagtgattggagtttaatgatttggatgggtgaatgaatacttttggcaatataagTGTACTTCTGTGTTCTTGTGTCCACAACTCTGCATACTCTTCAGGCTATAACGTAGGTctgacgcagaagtataaactggCCTTCCATTCAGGTTGTTTTAGCATTGTTGACACACAGCCACAGATTGTGTACTTTCTCAGTACCCCTTCTTCATAAAGAAGTATCATCCCTACTGTTTAAGATTTCTCCAACACAAATGCATCTATTTAATTTACTAACCCAACCCACCAGTAAACCTACATGTTATCAGATATTTATATTAGGATGGGATGGTGTTGATATGATAAGAAAACCCCTTATTATTGGCTTCAGAAAATTATGTCATTAGTGTACACCCCTCTTTGAACTACTGTAGGAAAGACAGGCATTAAAAACAgttcattcatgttttttttttttgtaacattacCTTACCTACTGACTTATCGTCAGATATTTTCAtgattgtaatattttttaatactgatACTTTTGAACTTATTTTGCTTACTTTTCTCTGATTGTTTAAATACCAAAAATACTTAGGGGAAAGTCCtagatttaaagttattttgacaTGTATGCCACAGTGTAGTTCTACGACAGCATTTTAGGGCcactttcaaaaaataaaaatagtagacTTTGAGAACAAAggtgtaatattttgagaaaaaacaAGTAGTATTCATAGAATAAAGTCGCAATAGTAAATACTATTTCAACAATGAAGTTTTACTATTGTGAGATTTAAATCATAATATTTCGAgattaaaactgtaatatttcaacattaaatataaaatattttgagaataaagtcagtaTTTTGAGAGCAGTAATTGTAAGCACTGCTCCTTCAGAATTGACCATTGTGTTTGCCATTCCCATCACTGTCTCCTGTGACACTGCATGCCCTCGTCCAATGGCACGGACACACAACCAATGACAGCCTGTAGCCACTGCCCGAGGGTCCTCCTTCAAGACACCAAGTGCACCTGCATCTTTCTCCTGAATAAACacagtttctgtgtttttatactgATAACAGTCCTGTGCTAATGAACAGCAAATTGAGTATTTcgaaaatataatttaacaatCCCTATTTTTTACGTGAGGAGATTGCTATATTGCTGTAACTCTTTGACCATAATTATGCATTTTCTCATTGTTGTACTGccattttatactgtaatattgtaactatatttacaaaatattacatCTTAACTTTACTATCAAAATATTATAGCATTATTCTAGAAATATTGTGACTTGATCCTCAAAATGTTctactttattctcaaaatattacaaatttattATGATGACTAAAAGGCATGTTTTCAATTCACAGTtgatgtcacaaaaaacagacaTATATGCACCTATACTGTCGATATAAGTTTAGCTCTGCCCATTCACCCTGAAGTTATGAGAAGTGTTTGAACCTGGAATGCTTTCAGAACGGGTCTTAATTCAGGCTAGCCAGTCAGAACAGTTCTTAATAATGAAATGACTGAGATTCTGTTCTTAGTTTAACTCTAAGGAACAAGTGGTTGTGTAAAAATGAAGTATGATCTCTTTTGGTACATAAACCTACAAATGACCGATTATAATGTAGGAAATGGAGCCTTTAGCACAGCACTAATCAGATGATGTTCATTTTGTCATAGTGAATATTACTAGCACAAGCTTTGTTGACTGATCTACTCTTTTTAACCTGTCCCACATTAACATTACAGCTGAAATAGATATAAGAGATAAATTAAACGTTGGTGTCAGATTAGAAGGAAAGCTAATCCATGGCGATGCCCTGTTTAACTGGCTTTCATGGGACCACAGTGAATGTCTGCTGAACAAGTACATGAACTTTTACTGTTCAGAGCATTGCTGACCTTTTTTACACTgatatttatttcctttttttaatttaatacttaTGTGTTATGTTTGGCTGTTTATGAGTTTAGAAAGTTTCTGATTTAGAAAGATTGAATGATGGATAGTTTTTATttagatgtaaatgtatgatataCAAGCACATAATAAACTATGCTGTATATTTTA

Function

NR:

description
PREDICTED: suppressor of cytokine signaling 5-like

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0044267 cellular protein metabolic process biological_process

KEGG:

id description
K04698 SOCS5; suppressor of cytokine signaling 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007233940.3 True 5004 mRNA 0.43 2 18204045 18210644

Neighbor

gene id symbol gene type direction distance location
cep164 cep164 coding downstream 1080 18187846 ~ 18202965 (-)
LOC107196958 NA coding downstream 23042 18175774 ~ 18181003 (-)
sik3 sik3 coding downstream 85424 18067879 ~ 18118621 (-)
LOC103039101 tmem25 coding downstream 143776 18047537 ~ 18060269 (-)
mpzl3 NA coding downstream 228163 17945074 ~ 17975882 (-)
samd4b samd4b coding upstream 24110 18234754 ~ 18248467 (-)
paf1 paf1 coding upstream 46562 18257206 ~ 18266997 (-)
LOC103033864 crx,LOC108443020,LOC107395012,LOC106612616,LOC107094494 coding upstream 88929 18299573 ~ 18306160 (-)
trnap-agg NA coding upstream 190918 18401562 ~ 18401633 (-)
kcnj13 kcnj13 coding upstream 212188 18422832 ~ 18449918 (-)
LOC111192376 NA non-coding downstream 30709 18170760 ~ 18173336 (-)
G4644 NA non-coding downstream 45914 18157207 ~ 18158131 (-)
G4638 NA non-coding downstream 71661 18130841 ~ 18132384 (-)
G4619 NA non-coding downstream 137107 18063161 ~ 18066938 (-)
LOC111192372 NA non-coding downstream 163294 18034472 ~ 18040751 (-)
G4655 NA non-coding upstream 5487 18216131 ~ 18216727 (-)
G4630 NA non-coding upstream 44461 18255105 ~ 18256327 (-)
LOC103033003 NA non-coding upstream 57371 18268015 ~ 18273460 (-)
G4678 NA non-coding upstream 175039 18385683 ~ 18387375 (-)
G4671 NA non-coding upstream 178628 18389272 ~ 18504882 (-)
G4621 NA other downstream 163279 18030362 ~ 18040766 (-)
LOC103040336 mpzl2 other downstream 205296 17983885 ~ 17998749 (-)
ercc2 ercc2,LOC107743694,LOC107601732 other downstream 1550077 16644492 ~ 16653968 (-)
LOC103022652 LOC103022652,LOC108425821,LOC108277503 other downstream 1921413 16278005 ~ 16282632 (-)
slc6a4 slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 other downstream 3732293 14380755 ~ 14471752 (-)
LOC103038769 NA other upstream 1428721 19639365 ~ 19648822 (-)
LOC103038464 NA other upstream 1442142 19652786 ~ 19655913 (-)
LOC111192876 NA other upstream 2275950 20486594 ~ 20492524 (-)
G5095 eif4g1 other upstream 2419581 20630225 ~ 20637068 (-)
inppl1 inppl1,inppl1a,LOC108261207 other upstream 3705722 21916366 ~ 21940806 (-)

Expression


Co-expression Network