LOC103022193 (LOC107699842,LOC107592657,LOC107555278)


Basic Information

Item Value
gene id LOC103022193
gene name LOC107699842,LOC107592657,LOC107555278
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 12615654 ~ 12626454 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234501.2
TTAAACAAAGCTTGTaaactataaaaacaataaagactGCAACAATACATAGTCTAACACATAATTAATGTTTCATTGAgtttttagcagtttagcttcatTCACCCAAAAAGGGGCCTGAATTTCCATCATTACTGCGCATGCGCGCCGCCTGGGCGACGTCTCCTGTAAAAAGAGTCACATGAGCCGCTGTCGCAACTTCTTTCAGTAGCCTGCTTTTCTCCAGCAGTTCTAAACACCCTCCACATGTTAAAATGGACAGTCTAGGACTTAAACTACATGACTTTTCCCAGTTCAGGTGATATGTCAGCTAAAATTCACCATCATGTCTGTGGATGGCCCCCGGACGTCGGTGTTCACCTTCCAGTCAGCCGTACACAGTGTGCATGTCCTCCGCTCCCTGGATGAACAGAGACAGAAGGACGTCCTCTGTGATGTGACCGTAGAAGTGGAGTGCAGGAGCTTTCGAGCGCACCGCTCCGTACTGGCATGCTGCAgcaactatttttacaccaggcTCCAAAACAACACGGGCTGGAACTTGGTCATCAATCTACCTGATGAAGTCACTGTAGAAGGCTTTGTGCCTTTGCTGCAGTTTGCCTACACTGCAAAACTTCACTTCACCAAAGACAACATTCTGGAGATTCACAGATGTGCCGAGCTGTTGGGATTTCACAATCTTGACAAAGCCTGCTTCGAGTTCCTCATCCCCAAGTTCTCTGATGGCAGCGGAAACACTCAGGAAGCCAAGAGGAAGAGCAAAAACAGCAACAAGAGCAAAGCCTGCCATGAGAAACCCTCAGCTGCCAGTGGAGACTGCAGTACTACCAGTGAGCATCACACTAATACTGAAACAGAAAATGTAGCGCTGGTTCCTGAGGTTGAGACGGTACCTAGTGTGCAGACTGAAACAGACTGTGTGCCTCAGGTTCCTGAGGTTGAGGTGGTATCTACTGTGCAGACTGAAACAGACAGGGTGCTGCAGGTTTCTGGGGTTGATACAGAACCTATTGTGCCAAGTGCACAGTGTCCTGAAGAATGCCAGACTGTTTCCTCTAATGAAGATCTACCCTTAAATGTACCCTCAGTCTCATTCCAGACTGCTTCTGGCCAGGACAGAACAGAACTGTGTTTACAGAACTGCGGGCCTCAGTTACCACTGTCTTCCTCAGTACCGGCCGGAGTGGTCTGTCCGTTTCTTTCAGTAACTTGCACCAGTAACAGTGAAAATGTGCATCCTGCCACAGCGGGCTGTGATGGGGACATTTTGGAGATGGGAGAAGCGTTCCAGAATGGACTGTCAATGGATGTTGCACTTGATGTTCCTGGTGAAACATCTGGCACTGAACCTGTAACCATGCCAGATTTAACTGAAGGTCAATTTAACCAGCCCATAAGGGTTCTGGAACCATCAGCAGAATGCAGCCAGTTGCGTCCTCTAAGCCCCACAGAGACCAGTGAAGTTTTGGACAGCATTGCGTCAGTGACTAACCTAGAGAGCATTAACTCCGAGGCCCCGCAGACCTTTGACTCGGATGAGCAAATATTCCCTGATCCAGCACCTAGTGGCGGGTCCACAGAAAGGAGCACAGTAGAGAGGGAGGTGGCAGAGCATCTGGCGAAAGGTTTTTGGCCAGATTTAAGCTCTTCTTTGGCAGAGCCTCTGGAGTCGATGGAGCAGGCAGCTGTAGGGAATGGTGCCGACTTCCACTGGCTCAAGCACCTGGACTTAGGTGCCGCCCCTGATGACTGCCCTTTCCTCAGAGACCTAAGCTCCAAAGATGGACAACCCTCAGGAGGTGACAGTCTGTCCAAAGAAGAGAGCAGAGAAAGTTCCTGTGTGTCTCCTATAATCTCTGGCGAGAATTCTGAATGCGACACAGATGGAGACTGTGCGGATCTTGGTGAGCAAGTGTGTGAGGTAGAACTGCCATTCCCTGTTGAGCAGATTCCAGGCATGAGCAGGCGTGCTTTCCTGCAGATGCTGAAGGAGCAGCGGCTGACCGCAGAGCAGCTGGAGTTTGTGCAAGACGTTAGACGTCGCAGCAAAAACCGTATGGCTGCTCAGCGATGCCGCAAAAGAAAACTAGACTGCATCTACAGGCTGGAGGGGGACATCAAGAAACTGAGGACACAGAAGGAGAAGTTGCTGCAGGAGCGTagccaactgaagcagaacatggAGGAAGTGCGGCAGTCTGTCTCGGGACTGTGCCAGATTGCGTGCCCCGAGGCGTTAGCACAGCCGGAGCAGCTCACCATCTTAGCCAGGTACCTCTCCTCAGATTGCCCCACCTCACTGCCCCTCACCCCCATGGCTTGTCCTGGCTTGGCTGCGTCTGACCAGGACAACCTTCCAGACACCTGCCTTGAAGCTAGTGTCACTGGACAATCTCCAAATGACTGTCCCCTAGGAAACAGAGCAGGAATTAAACCTACTTCTACACTCTTTCAAGATGATACACAGAGCGACGTTACAGAACCTCACGTCCCGTAATCCAGAAGGCAGGTCCGTGTGGAAACGGCAGAGGAACATACTGTATCTGTGAGCGTGGTTATGGTAGAGCACAAGTCTGCCATTTGTATATAATAGTACAATTATATGTGTAAGTGGAAaataattttcacattttatattatacttggatttAATCTCAATGAACTGATTATTACTGCAAGCATTTGCTACCTAACAATCGGGGGTGTCGtttgaaaatatatactgtacacttaTTTTCAAAGAAATGATTCCAAAAAATTGCTGCATAGTATAAACTATTGAAACAAACTTGCCAAGCCGTTGCCAAGTGATTGTGAAGAGTCGCAGACACTTTGCAGATGTTTGTCATGCtaaatatctgacccagtcggcGACTGTGTGTCAAGAGCATTAACTacttacagccaatgggatcacaaagaaagagagaactaTAGGTCCAAAACGCATGCTGTTTATATGCTGTTTCCCCCCATATATCAGTTTTAAACTCTAGAGGAGGCCTGCAAGTGAGTtcca
>XM_007234502.2
TTAAACAAAGCTTGTaaactataaaaacaataaagactGCAACAATACATAGTCTAACACATAATTAATGTTTCATTGAgtttttagcagtttagcttcatTCACCCAAAAAGGGGCCTGAATTTCCATCATTACTGCGCATGCGCGCCGCCTGGGCGACGTCTCCTGTAAAAAGAGTCACATGAGCCGCTGTCGCAACTTCTTTCAGTAGCCTGCTTTTCTCCAGCAGTTCTAAACACCCTCCACATGTTAAAATGGACAGTCTAGGACTTAAACTACATGACTTTTCCCAGTTCAGCTAAAATTCACCATCATGTCTGTGGATGGCCCCCGGACGTCGGTGTTCACCTTCCAGTCAGCCGTACACAGTGTGCATGTCCTCCGCTCCCTGGATGAACAGAGACAGAAGGACGTCCTCTGTGATGTGACCGTAGAAGTGGAGTGCAGGAGCTTTCGAGCGCACCGCTCCGTACTGGCATGCTGCAgcaactatttttacaccaggcTCCAAAACAACACGGGCTGGAACTTGGTCATCAATCTACCTGATGAAGTCACTGTAGAAGGCTTTGTGCCTTTGCTGCAGTTTGCCTACACTGCAAAACTTCACTTCACCAAAGACAACATTCTGGAGATTCACAGATGTGCCGAGCTGTTGGGATTTCACAATCTTGACAAAGCCTGCTTCGAGTTCCTCATCCCCAAGTTCTCTGATGGCAGCGGAAACACTCAGGAAGCCAAGAGGAAGAGCAAAAACAGCAACAAGAGCAAAGCCTGCCATGAGAAACCCTCAGCTGCCAGTGGAGACTGCAGTACTACCAGTGAGCATCACACTAATACTGAAACAGAAAATGTAGCGCTGGTTCCTGAGGTTGAGACGGTACCTAGTGTGCAGACTGAAACAGACTGTGTGCCTCAGGTTCCTGAGGTTGAGGTGGTATCTACTGTGCAGACTGAAACAGACAGGGTGCTGCAGGTTTCTGGGGTTGATACAGAACCTATTGTGCCAAGTGCACAGTGTCCTGAAGAATGCCAGACTGTTTCCTCTAATGAAGATCTACCCTTAAATGTACCCTCAGTCTCATTCCAGACTGCTTCTGGCCAGGACAGAACAGAACTGTGTTTACAGAACTGCGGGCCTCAGTTACCACTGTCTTCCTCAGTACCGGCCGGAGTGGTCTGTCCGTTTCTTTCAGTAACTTGCACCAGTAACAGTGAAAATGTGCATCCTGCCACAGCGGGCTGTGATGGGGACATTTTGGAGATGGGAGAAGCGTTCCAGAATGGACTGTCAATGGATGTTGCACTTGATGTTCCTGGTGAAACATCTGGCACTGAACCTGTAACCATGCCAGATTTAACTGAAGGTCAATTTAACCAGCCCATAAGGGTTCTGGAACCATCAGCAGAATGCAGCCAGTTGCGTCCTCTAAGCCCCACAGAGACCAGTGAAGTTTTGGACAGCATTGCGTCAGTGACTAACCTAGAGAGCATTAACTCCGAGGCCCCGCAGACCTTTGACTCGGATGAGCAAATATTCCCTGATCCAGCACCTAGTGGCGGGTCCACAGAAAGGAGCACAGTAGAGAGGGAGGTGGCAGAGCATCTGGCGAAAGGTTTTTGGCCAGATTTAAGCTCTTCTTTGGCAGAGCCTCTGGAGTCGATGGAGCAGGCAGCTGTAGGGAATGGTGCCGACTTCCACTGGCTCAAGCACCTGGACTTAGGTGCCGCCCCTGATGACTGCCCTTTCCTCAGAGACCTAAGCTCCAAAGATGGACAACCCTCAGGAGGTGACAGTCTGTCCAAAGAAGAGAGCAGAGAAAGTTCCTGTGTGTCTCCTATAATCTCTGGCGAGAATTCTGAATGCGACACAGATGGAGACTGTGCGGATCTTGGTGAGCAAGTGTGTGAGGTAGAACTGCCATTCCCTGTTGAGCAGATTCCAGGCATGAGCAGGCGTGCTTTCCTGCAGATGCTGAAGGAGCAGCGGCTGACCGCAGAGCAGCTGGAGTTTGTGCAAGACGTTAGACGTCGCAGCAAAAACCGTATGGCTGCTCAGCGATGCCGCAAAAGAAAACTAGACTGCATCTACAGGCTGGAGGGGGACATCAAGAAACTGAGGACACAGAAGGAGAAGTTGCTGCAGGAGCGTagccaactgaagcagaacatggAGGAAGTGCGGCAGTCTGTCTCGGGACTGTGCCAGATTGCGTGCCCCGAGGCGTTAGCACAGCCGGAGCAGCTCACCATCTTAGCCAGGTACCTCTCCTCAGATTGCCCCACCTCACTGCCCCTCACCCCCATGGCTTGTCCTGGCTTGGCTGCGTCTGACCAGGACAACCTTCCAGACACCTGCCTTGAAGCTAGTGTCACTGGACAATCTCCAAATGACTGTCCCCTAGGAAACAGAGCAGGAATTAAACCTACTTCTACACTCTTTCAAGATGATACACAGAGCGACGTTACAGAACCTCACGTCCCGTAATCCAGAAGGCAGGTCCGTGTGGAAACGGCAGAGGAACATACTGTATCTGTGAGCGTGGTTATGGTAGAGCACAAGTCTGCCATTTGTATATAATAGTACAATTATATGTGTAAGTGGAAaataattttcacattttatattatacttggatttAATCTCAATGAACTGATTATTACTGCAAGCATTTGCTACCTAACAATCGGGGGTGTCGtttgaaaatatatactgtacacttaTTTTCAAAGAAATGATTCCAAAAAATTGCTGCATAGTATAAACTATTGAAACAAACTTGCCAAGCCGTTGCCAAGTGATTGTGAAGAGTCGCAGACACTTTGCAGATGTTTGTCATGCtaaatatctgacccagtcggcGACTGTGTGTCAAGAGCATTAACTacttacagccaatgggatcacaaagaaagagagaactaTAGGTCCAAAACGCATGCTGTTTATATGCTGTTTCCCCCCATATATCAGTTTTAAACTCTAGAGGAGGCCTGCAAGTGAGTtcca

Function

NR:

description
PREDICTED: transcription regulator protein BACH1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234501.2 True 3022 mRNA 0.48 5 12615654 12626454
XM_007234502.2 False 3010 mRNA 0.48 5 12615654 12626454

Neighbor

gene id symbol gene type direction distance location
gbe1 gbe1,gbe1b,LOC107752276,LOC102793958 coding downstream 400913 12018015 ~ 12214741 (-)
LOC103031554 zgc:63694,LOC108426967,LOC107752277,LOC107699226,LOC107555275,LOC108278095,LOC107728169,LOC107592659,LOC107699183 coding downstream 638962 11946470 ~ 11976692 (-)
tmem106b tmem106b coding downstream 828512 11777578 ~ 11787142 (-)
LOC103030898 LOC108426917,LOC107588234,LOC106582211,LOC107752288,LOC107683449 coding downstream 838351 11767555 ~ 11777303 (-)
LOC103024995 NA coding downstream 889456 11714121 ~ 11726198 (-)
LOC103022701 tnfrsf19,LOC108415268,LOC103474716 coding upstream 41581 12668035 ~ 12706109 (-)
ap2s1 ap2s1 coding upstream 526565 13153019 ~ 13165105 (-)
tmem160 tmem160,LOC106537151 coding upstream 833246 13459700 ~ 13467692 (-)
LOC103047661 LOC101071669,LOC106934088,LOC102221054 coding upstream 857720 13484174 ~ 13513361 (-)
LOC103047347 pitpna,LOC107685084,LOC107743636,LOC107548584,LOC107756865 coding upstream 899965 13526419 ~ 13541264 (-)
G3268 NA non-coding downstream 37243 12576767 ~ 12578411 (-)
G3263 NA non-coding downstream 46084 12568302 ~ 12569570 (-)
G3161 NA non-coding downstream 697309 11917874 ~ 11918345 (-)
G3163 NA non-coding downstream 706641 11906933 ~ 11909013 (-)
G3150 NA non-coding downstream 726408 11887968 ~ 11889246 (-)
G3301 NA non-coding upstream 89649 12716103 ~ 12720619 (-)
G3324 NA non-coding upstream 372682 12999136 ~ 12999640 (-)
G3337 NA non-coding upstream 408035 13034489 ~ 13035079 (-)
G3354 NA non-coding upstream 469024 13095478 ~ 13096194 (-)
G3356 NA non-coding upstream 520684 13147138 ~ 13151004 (-)
LOC111192956 LOC108412924,LOC108444125,LOC108444119,LOC108416439 other downstream 674910 11924002 ~ 11940744 (-)
sarm1 sarm1,LOC107669752,LOC107743642,LOC107756984,LOC107685076 other downstream 1321772 11281209 ~ 11293882 (-)
LOC103025442 lhx1a,LOC108427001,LOC108277614,LOC107743643,LOC105897175,LOC107669762,LOC107589700 other downstream 1931189 10654858 ~ 10684465 (-)
G2783 NA other downstream 2032907 10582289 ~ 10582747 (-)
rap1gap2 rap1gap2 other downstream 2153794 10247465 ~ 10461860 (-)
G3297 sacs,LOC107593479,LOC107740366,LOC107670382 other upstream 113690 12740144 ~ 12758513 (-)
sgcg sgcg other upstream 132612 12759066 ~ 12781165 (-)
LOC111197384 NA other upstream 503758 13130212 ~ 13135641 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other upstream 918046 13544500 ~ 13572372 (-)
LOC111189390 NA other upstream 1497719 14124173 ~ 14133237 (-)

Expression


Co-expression Network