LOC103031554 (zgc:63694,LOC108426967,LOC107752277,LOC107699226,LOC107555275,LOC108278095,LOC107728169,LOC107592659,LOC107699183)


Basic Information

Item Value
gene id LOC103031554
gene name zgc:63694,LOC108426967,LOC107752277,LOC107699226,LOC107555275,LOC108278095,LOC107728169,LOC107592659,LOC107699183
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11946470 ~ 11976692 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236706.3
CCACCCATACCCGGGCTTTTTTTGTGGTGGTTTGTAGTGCTTAGTTCCTGTTTCGTACAGCTCATATCTGGAGAGAAATTGGTGCAGCCCTCGGTTACAGCACACCGCATCTCTCTCGAGGACCCTGACCCAGCTGTGTgcttgtgtgggtgtgtgtcggagctcctcctcatcatcatcatggtcCTAGCCCATCTGAAAGGGTTTGGTGAGCAGCTGCTGAGAGTGAAGGCGGTGGACTGCAGTACGGAGGAGTCCCGGCTGTCTCGCTGTTTGAACACGTTTGATCTGGTGGCTCTGGGCGTGGGCAGCACACTCGGTGCTGGTGTATATGTGCTTGCTGGAGCAGTGGCGCGGGAAAATGCTGGACCGGCCATCGTCCTCTCTTTCCTCATCGCCGCTCTGGCTTCAGTCATGGCTGGACTGTGTTATGCAGAGTTCGGAGCGCGGGTCCCCAAGACGGGTTCAGCGTACCTGTACAGCTACGTAACTGTGGGAGAACTGTGGGCGTTCATCACCGGCTGGAACCTCATCCTCTCTTACATCATAGggACCTCCAGTGTTGCTCGAGCCTGGAGCGCCACATTCGACGAGCTCATAAAGAAGCAAATCGAGCTATTCTGCAGGACACACATGAGAATGAATGCTCCTGGAATTTTAGCTGAATACCCAGACATGTTTGCGGTTCTCATCATCCTCATACTTACTGgatTGCTGGCATTTGGTGTGAAGGAGTCTGCAATGGTGAACAAGGTGTTCActtgtgtgaatgtgctggtaTTGATGTTCGTGGTGGTCTCAGGCCTGATCAAAGGAACCTTCAAGAACTGGAACATCGATCCAGATGATGTCCTTAATGGCACTAGTGTAAATGATTCGGGGCCATTGCCTTCAAAAGAGATTCTGGGTGAAGGAGGGTTTATGCCGTTTGGCTTCACTGGAGTGCTGTCAGGCGCTGCTACCTGCTTTTATGCCTTTGTTGGATTTGACTGTATTGCTACTACAGGCGAAGAAGTAAAGAACCCACAGAGGGCCATCCCCATTGGCATAGTGGCCTCCCTCCTCATCTGCTTCGTGGCCTACTTTGGTGTATCGGCAGCTCTCACCATGATGATGCCCTACTACTTGCTGGATCAAAACAGTCCTCTGCCTGCGGCGTTTAAATACGTGGGCTGGGACGGGGCGAAATATGCTGTGGCAGTTGGGTCACTGTGTGCCCTCTCCACCAGTCTACTAGGTTCCATGTTTCCAATGCCCAGAATTATCTGGGCCATGGCTGAGGATGGGCTGCTCTTCAAGTTTTTGGCCAAAATCAACACTAAATCCAAAACCCCTGTATTGGCCACAATAACATCAGGCATTGTAGCAGCTGTGATGGCTTTCCTGTTTGACCTGAAGGATTTGGTGGATCTTATGTCGATTGGGACACTGCTGGCATACACCCTAGTGGCGGCCTGCGTCTTGGTTTTAAGGTACCAGCCGGAGCAGCCCAGTGTGACTCCGCAGTATCAGAGTGCAAACTGTCAGGAGGATGCTGAGCCAGACTCTGTCAGTGAGGGCAGCTCACGGTATCTGTCTGGACCTCCAGAAACCTGCACCCTCAGCAACCTTCTCTTCCCCAAAAATACTGAACCTTCTCGCCTCTCCGGCTTTACCGTCAAcatctgcaccagtctcataGgtgtgctggtgtgtgttttctgcattgtagcTGTACAGGGGGGTTTACAGGTGTGGTCCCTCACTGTGCTGAGTATTCTCGGGGGACTGTGTTTCATTATTACTATGATAATCTGGCGGCAGCCTGAGAGCAAGACCAAGCTTTCCTTCAAGGTTCCTCTCCTTCCCTTTTTACCTGTGCTCAGCATGTTCATCAATGTCTACCTGATGATGCAGCTGGACAGAGGCACTTGGTGGCGTTTCTTGATCTGGATGATTATTGGGTTCGTCATCTACTTTGGCTATGGGATCAGAAACAGTGTGGAGTCTGCTTTGGCCAGAAGTAATATTGAAGaggca

Function

NR:

description
PREDICTED: high affinity cationic amino acid transporter 1-like

GO: NA

KEGG:

id description
K13863 SLC7A1, ATRC1; solute carrier family 7 (cationic amino acid transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236706.3 True 2019 mRNA 0.51 12 11946470 11976692

Neighbor

gene id symbol gene type direction distance location
tmem106b tmem106b coding downstream 159328 11777578 ~ 11787142 (-)
LOC103030898 LOC108426917,LOC107588234,LOC106582211,LOC107752288,LOC107683449 coding downstream 169167 11767555 ~ 11777303 (-)
LOC103024995 NA coding downstream 220272 11714121 ~ 11726198 (-)
arl4a arl4a,arl4aa coding downstream 233199 11709625 ~ 11713271 (-)
lrrc72 NA coding downstream 637798 11304590 ~ 11308672 (-)
gbe1 gbe1,gbe1b,LOC107752276,LOC102793958 coding upstream 41323 12018015 ~ 12214741 (-)
LOC103022193 LOC107699842,LOC107592657,LOC107555278 coding upstream 638962 12615654 ~ 12626454 (-)
LOC103022701 tnfrsf19,LOC108415268,LOC103474716 coding upstream 691343 12668035 ~ 12706109 (-)
ap2s1 ap2s1 coding upstream 1176327 13153019 ~ 13165105 (-)
tmem160 tmem160,LOC106537151 coding upstream 1483008 13459700 ~ 13467692 (-)
G3161 NA non-coding downstream 28125 11917874 ~ 11918345 (-)
G3163 NA non-coding downstream 37457 11906933 ~ 11909013 (-)
G3150 NA non-coding downstream 57224 11887968 ~ 11889246 (-)
G3149 NA non-coding downstream 61771 11884305 ~ 11884699 (-)
G3083 NA non-coding downstream 104285 11841199 ~ 11842185 (-)
G3263 NA non-coding upstream 591610 12568302 ~ 12569570 (-)
G3268 NA non-coding upstream 600075 12576767 ~ 12578411 (-)
G3301 NA non-coding upstream 739411 12716103 ~ 12720619 (-)
G3324 NA non-coding upstream 1022444 12999136 ~ 12999640 (-)
G3337 NA non-coding upstream 1057797 13034489 ~ 13035079 (-)
LOC111192956 LOC108412924,LOC108444125,LOC108444119,LOC108416439 other downstream 5726 11924002 ~ 11940744 (-)
sarm1 sarm1,LOC107669752,LOC107743642,LOC107756984,LOC107685076 other downstream 652588 11281209 ~ 11293882 (-)
LOC103025442 lhx1a,LOC108427001,LOC108277614,LOC107743643,LOC105897175,LOC107669762,LOC107589700 other downstream 1262005 10654858 ~ 10684465 (-)
G2783 NA other downstream 1363723 10582289 ~ 10582747 (-)
rap1gap2 rap1gap2 other downstream 1484610 10247465 ~ 10461860 (-)
G3297 sacs,LOC107593479,LOC107740366,LOC107670382 other upstream 763452 12740144 ~ 12758513 (-)
sgcg sgcg other upstream 782374 12759066 ~ 12781165 (-)
LOC111197384 NA other upstream 1153520 13130212 ~ 13135641 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other upstream 1567808 13544500 ~ 13572372 (-)
LOC111189390 NA other upstream 2147481 14124173 ~ 14133237 (-)

Expression


Co-expression Network