LOC103035060 (LOC108440363)


Basic Information

Item Value
gene id LOC103035060
gene name LOC108440363
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 14138449 ~ 14168938 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236807.3
agagagagaaagagagagcgagggaaggagggagagagcgagggaaggagggagagaaaagggAAACAAAGTGTCTCTCACACATACTAGGAGCACATGTCGTGAAGGAAAAATGCCCACCAACTTCACAGTGGTGCCGGTGGAAGATGGTCAGCCTTCAAGTCCAGACAGTGACGTTCAGAGCCCCGAAGGTGAAGATGAGGAGAAGCCTGGACTTTACTCAGGAGAGGAAACCCCTGGTGAGGACAGTCCCTTTATTACCACTGGTGACCATGAGGGGAGCTGTGATGGGAAGAACATGGCGCTGTTTGAGGAAGAAATGGACAGCACTCCAATGGTGTCAGCCCTTCTCAACAAACTGGCTAATTACACCAACCTGACACAGGGAGTCATAGATCATGAGAAAGCTGAGAGTGAGGATGGAGTTAAAAAGGTCACCATCAGGggCCCTCAGATGGGCACGTTTATCGGAGTGTATCTGCCCTGTATGCAGAACATCTTGGGTGTAATTCTCTTCCTCCGTCTGACGTGGATCGTGGGCACGGCTGGAATCTTGGGTTCCTTTGCCATTGTTTTtatgtgctgtgtttgtACTCTTCTTACAGCAATATCAATGAGTGCCATCGCAACTAACGGTGTGGTGCCAGCTGGTGGCTCGTATTACATGATCTCCAGGGCACTGGGTCCAGAGTTTGGAGGTGCTGTTGGCTTGTGTCTCTACTTGGGTACAACCTTTGCTGGATCCATGTACATCCTGGGAACCATAGAGATCCTTTTGATGTACATTGTTCCAGATGGAGCACTGTTTGTGGACAAGGCGAATGAGCCATTGGCTCAGCAGAATAACATGCGTGTGTATGGAACCTGCTGCTTGGCTCTCATGGCcctgatggtgtttgttggtgtgaAATATGTCAATAAACTGGCATTGGTCTTCCTCTCCTGTGTCATCCTGTCTATCATGGCCATTTATGCTGGAGTCATCAGAAGTGCCATCAGCCCTCCAGACTTTCAAATCTGTCTGCTGGGAAACCGAACACTGAAAAACCATGactttgagaaatgtctaaagaCAGAAGTCATCAACAACTCTACAGTAACAACACAACTGTGGGAGCAGTTCTGCAATGGCTCTTCCATCGATGCAGATTGTGATCCCTACTTCGCTCTGAACAATGTGACCGAGACCAAAGCCATCCCAGGGCTGCTCAGTGGAGTAATCTCAGAAAACTTGTGGGGAACTTACGTTCCATATGACACGGTGCTAGAGAAGAATCTGTCAGTGGCAGAGGTGCCTGAGAGCGAGaaggaaaaacttaaaaatgtcaaAGACATGCCCTACGTCTTTAACGACATCACCACCTATTTTACCCTAATGGTGGGCATCTTCTTTCCCTCAGTTACAGGGATTCTGGCAGGATCTAACCGGTCTGGAGATTTGAGGGACGCTCAGAGGTCTATCCCCATTGGTACCATTCTGGCCATTGTTACCACTTCCATCATCTATTTGTCCTGTGTGGTGGTGTTTGGGGCCTGTGTAGAGGGAGTGGTCCTGAGAGACAAGTTTGGGTTCTCTGTAAAAAGAACACCAGTGATTGGTATTCTGGCTTGGCCATCTCCTTGGGTGCTtgtgattggctcttttttctCGTGTTGTGGAGCAGGACTACAGAGCCTCACTAGTGCCCCCAGACTTCTGCAGGCCATCGCACATGATGGACTTGTGCCATTCTTGCAGGTGTTTGGTCATAGTAAATCTAATGGAGAGCCAACATGGGCTTTACTTCTGACTGCAGGAATCTGTGAGATCGGGATTCTTATCGCCTCCCTGGATGTTGTTGCTCCAATTCTTTCTATGTTTTTCCTGATGTGCTACCTATTTGTCAACCTGGCCTGTGCTGTTCAAACACTACTGCGCACCCCAAACTGGAGACCACGCTTTAAATTTTATCACTGGACTCTTTCATTCTTGGGGATGAGCCTTTGTCTTTCTCTTATGTTTGTATCATCTTGGGGGTACGCCCTGTTTGGCATGTTATTTGCAGGATGCGTCTATAAATACATTGAATACAGAGGGGCGGAGAAGGAATGGGGTGATGGAATCCGAGGGTTGTCTTTAAATGCAGCTCAATACGCTCTTATCAAGCTGGAAGAGGCACCACCTCACACCAAGAACTGGAGGCCTcagctgctggtgctgttgaGTTTAGACTCAGACCTGATGGTAAAGCACCCACGACTGCTGTCTCTGACGTCCCAGCTGAAGGCAGGGAAAGGCCTGACGATTGTCTGCTCCGTTCTGCAGGGAATCTACATGAACCGGGGTGCAGACGCCAAGCGCTCTGAAAAGAACATTAAGGCAGCCATGGCTGCAGAAAAAACAAAGGGCTTCTGTCATGCTGTGGTGTGCTCTAACCTGCGAGACGGTTTCTCCAACTTGATCCAGTCCGCTGGCCTGGGAGGCATGAAGCATAACACTGTTCTGATGGCCTGGCCCTGCAACTGGAGACAGGCTGAGGACTCCTCCTCCTGGAAGAACTTCATTGAGACAGTTAGAGAGACCACCTCCGCTCATCAGGCTCTGCTCGTGGCTAAGAACATCGACAGTTTTCCCTGCAACACGGAGCGTCTGACTGAGGGCACCATAGACGTGTGGTGGATTGTCCATGATGGAGGTCTCCTCATGCTGCTGCCCTTCCTTCTCCGCCAGCACAAGgTGTGGAAAAAGTGCAAGATGCGCATCTTCACTGTGGCTCACCTGGATGACAACAGCATTCAGATGAAGAAAGATCTGTACATGTTCATATACCAGCTGCGCCTGGACGCcgaggtggaggtggtggagatGCATGCGAGTGATATCTCAGCCTTCACCTATGAGAAAACCCTGGTTATGGAGCAGCGTTCTCAGTTGCTCAGGCAGATGCAGCTTTCCAAAACAGAGCGGGAAAGAGAGATTCAGAGTATTACTGATGAATCCAGGAGCTCCATTAAGAGAAAGGACCGTCCGAAGGACCCCACTCCCAACACACTGCAAGTGCCAGGAGCGGCACCTCTAGAGAATGAGGCTCATATGTTTCATGGAAAAAATACAAAGTCTCATACTGGCAGCCCAAGTTCTGACCACGTCCACATGACCTGGACCAAAGAGAAGTTTATCAGTGAGAGGAACAGGCATCGTGAAGCTAGCCAAGGGGTACGGGACATCTTCAACATGAAACCAGAGTGGGAGAATCTAAACCAGTCCAACGTGAGAAGAATGCACACTGCTGTTAAACTGAATGAAGTTGTGGTCAACAAATCCCAAGGGGCTCATCTTGTCCTGCTTAATATGCCTGGACCTCCTAAAAACAAGGGAGGTGATGAGAACTATATGGAGTTTTTGGAGGTTTTAATGGAGGGCTTGGATCGGGTTCTGCTTGTACGAGGTGGAGGTAGAGAAGTCATCACCATCTACTCGTAGCAGACGTGTGTGGACGGTGCACTGTTTAGAGTGTGTGCTCAGAGGAATTGTGTATTACTCAGGGTAGGAAAAGAATAAGGAGACATGTCTTCCATGCAAAGGACTGGAATTTCACACGACAGCCTGATTTTATGCACTCAAAGCAGCCAAAACTTAATGCTAAAAACCTGCTTTatctggttgttttttttagtaattttatttttatttttaaacatgctctagtTTTAGTGTGATACGCTGAAAAAAGACAAGTgcagtttttattattcttatattCCCAACATGATCATTATTAGTATACCCTTTTATAAAATGCAGCTGTGTTAGAGATAAAATCGTATTTCAGCCActgctgaatcatttatatttttgataagtcaaaaataattatttcatttttttttaatataaaaatgtaagtttttatCACTTACTAGATAATATTAATCCAGTATTTTAGTCACATGGGACTACTAAAAAATGCAGATTTGATATTTTTCCCTACATCAAAGTAACTTTAGGTAATTTGTCTTTAAACCTAAATGGGTTAAGAATAGGTTaagaaattatgttttattcaaaCTGTATGTCAAGTGGTTTTGGTAAATTTCAGTGGTAAAACATACTAATTATACtcacataataatattaaataatgagagatcaaattattatttacacttGATCATGAAATCTTACCTGAGAGGATATCTTGAGAATGCCCACAGCTGTGTTAGgagtgaggtgttatcttgtgactgAGGTGCATGGTCATGGCAAGCCGatgtgaattatcagagttggagtgaggcctgatagtgagCCTTAGTGTGGGTTGAGGAATGTTAAGTGCCTATACTTAACACTAACACTACAGTAATGAAGTGTCTCATCCTTGTGAAACGTGTGCACAGGGAATATGTAAGAtaaagcattaccacccacagtggacagagcagtgagTGATAATGATTTGATTGTCCACGCAAACAGACAACCGACTCTGATAGAAATCACATTAGCATTCAATATAGAACTGgacgtgtcccatgactttcggCATGTTTGACATTTGACCTTGTGTGTTGATATGcaactctgg

Function

NR:

description
PREDICTED: solute carrier family 12 member 7-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236807.3 True 4568 mRNA 0.46 27 14138449 14168938

Neighbor

gene id symbol gene type direction distance location
LOC103025751 LOC108427003,LOC107730853,LOC107582235,LOC107683286,LOC108277959 coding downstream 388170 13734473 ~ 13750279 (-)
LOC103043894 LOC108426997,LOC107589740 coding downstream 425074 13703983 ~ 13713375 (-)
myo1c myo1c,LOC107756890,LOC107743634 coding downstream 479525 13591095 ~ 13658924 (-)
LOC103046123 NA coding downstream 556982 13574774 ~ 13581467 (-)
LOC103047347 pitpna,LOC107685084,LOC107743636,LOC107548584,LOC107756865 coding downstream 597185 13526419 ~ 13541264 (-)
git1 git1,LOC107685085,LOC107669736,LOC107548582,LOC105889552,LOC106580798 coding upstream 86377 14255315 ~ 14279290 (-)
LOC103037230 ssh2,LOC108440358 coding upstream 162867 14331805 ~ 14364469 (-)
blmh blmh,LOC107743628 coding upstream 245316 14414254 ~ 14435382 (-)
LOC103039849 cd3eap coding upstream 348997 14517935 ~ 14520858 (-)
LOC103040167 gpr4,LOC108278409,LOC107743733,LOC107669721,LOC107548551 coding upstream 371469 14540407 ~ 14577509 (-)
G3469 NA non-coding downstream 417424 13680519 ~ 13721025 (-)
G3474 NA non-coding downstream 446567 13689761 ~ 13691882 (-)
G3459 prpf8 non-coding downstream 463877 13674108 ~ 13674572 (-)
LOC111197623 NA non-coding downstream 753502 13381254 ~ 13384947 (-)
G3356 NA non-coding downstream 987445 13147138 ~ 13151004 (-)
G3610 NA non-coding upstream 78704 14247642 ~ 14247859 (-)
LOC111190296 NA non-coding upstream 112094 14281032 ~ 14318897 (-)
G3621 NA non-coding upstream 193062 14362000 ~ 14363072 (-)
LOC107197060 NA non-coding upstream 200275 14369213 ~ 14371084 (-)
LOC111190767 NA non-coding upstream 268733 14437671 ~ 14513968 (-)
LOC111189390 NA other downstream 5212 14124173 ~ 14133237 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other downstream 566077 13544500 ~ 13572372 (-)
LOC111197384 NA other downstream 1002808 13130212 ~ 13135641 (-)
sgcg sgcg other downstream 1357284 12759066 ~ 12781165 (-)
G3297 sacs,LOC107593479,LOC107740366,LOC107670382 other downstream 1379936 12740144 ~ 12758513 (-)
G3612 NA other upstream 114685 14283623 ~ 14284225 (-)
slc6a4 slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 other upstream 211817 14380755 ~ 14471752 (-)
LOC103022652 LOC103022652,LOC108425821,LOC108277503 other upstream 2109067 16278005 ~ 16282632 (-)
ercc2 ercc2,LOC107743694,LOC107601732 other upstream 2475554 16644492 ~ 16653968 (-)
LOC103040336 mpzl2 other upstream 3814947 17983885 ~ 17998749 (-)

Expression


Co-expression Network