LOC103033290


Basic Information

Item Value
gene id LOC103033290
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 3376610 ~ 3383122 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245151.2
TATCAGTGGTCAGTTGTATAGAAGTTCTGTGTAATAACCTAAAATAACCCCAATAACTCCGTTCCATTTATACTTCCACTGTTCCACATGATCGAACCTCGTATCTCCGCTGTTTCCTGCTTCCTTCCCAGATGCTGCAGTAATAAGGATGTGTTTAGGAGGAAGAGctggtgtgtatatatactccTGCTCATCCcacagatacacagatacacactcaTATCATCCTACCTAACGTACACTGGACTACAGCatatagcacacacacacagccgctCTGAGGAAAGatGCAATCTGCTTTTGTTGTACTGCTTTTGTTGGGAGGGTCCTCTCTCTCCACAGTGTTAGCTTTCCCAAATGGTCTTGTAACTCCTGCTTGTGAAAGAATGATACCAAATCATGGTGTTGATTCAATGTCGACCCCTGCACCTTTCTCCGTCATCTCAAACAGCTCCAGTTACGTGGCCGGCCAGCAGATTACAGTGACCCTTCAGGCCAATGAAACCGGGTTTTTTAAGGGTTTTCTGCTTCAGGCTCGGGCAGCAGATACAGGAGTCGGCCCAATCGGGACGTTCAGTGTGACGGGGACTGAAGCTCAGCTGCTCAACTGCAGCACTGTCGCCTCAGCTGTCAGTCACACATCAAATGTCAACAAGACAACTATCCAGGCCACGTGGACGGCCCCGGACAATGAGTTTAGGGATATCGAGTTTAGAGCTACATTCGTACAGAACTTTTCCATATTCTGGGTCGGGGTAAGAAGCTCTCGGCTTGCGTTTGCTGGTGTAATCCCAAACACGACCGTGGTCGCTCCAGCAAACTCAACTCTGGTTCCAAACACAACCATCGTTGTCCCATCAAGCTCAACGGCCATGGCTTCAAACGTGACTGTGAATTTAAACGGAACCGTGACTCCAAACAGCAGCCCTCCACTCTCCTTCAGCTCCTCGatcctcctcctgctcccaGTGATGCTCCTGAccctctctaacacacactgagacactttTATCATCAGGTTCATTCTTAGGATTGAATAAGCACTGCTTTATATATATGCATCAGTACATACACTTTGATAGTAAACCATTTagaattgtttatatttatgtgtgaTTCTATCCTAAAACTTTATCagatcttcacaaaaaaaatcctaaatgtACATTACAGGGCAGTCTTTACAAACAAGgcttaagcctagtcttggactacacagcatttgaATAGATAGGAGTAATCATTATCCCTGTCCAGGAAACCAATCCAAAGAGACCCAAATCGAGCAAATGATATCcgatatatattttctgtatatatGTGAGTGATAAAAGTATGTAAACTTTGTTTTTAGTATCTAGTGTTTCCCCTgtgcagtaaaataacatttctacTGGAATAAGGGCCAATTCCAAAGCATTAACTTTCCAAATTCTTTGGTTGAACTATTTCtttgcttagggtcattgtcttgttgcatgacccacATCCTGCCGAGACTCAGCTCACAGACAGATGTTCTAACATTTTAATTCAGAATTTTTTGGTGTAGTTCAGAAGCCACCCTGGACCAGATGCATTGAAATaagcccaaaccatgatgctaccaccactgtgtttcacagttgggataggTGTGATTTTCTGCTGAAATACAGTGctttcctttctccaaacataGAAATCTTctcatttaaaccaaaaaatgtTTGGTTTCATCCATCCAATTATATTGCTCTAATAGCCTACTGGCTTGTCCCTGTGACCTTCATTAAACTGCAGACATGCAGCAGTGTTCTTATTTGAGTGTTCCTATCAGGAATATTAACAATAGCCAATGGGagaaaggccttcagttgcttagaagtacCACCAAATTATTTGTGACTTTATTGACTATTACACGGCTTGTGCTCTAACTCATCCAGAACCACATCAGAATTATGTGTTTGCTACAcgattccatatgtgtcccttcatAGGTTTGAtgacaacaatattcattttaaacattaatgatggaaaaaaaaaaaattattgtactTTAGCCGAAGTGAACAATTCACAGCTCTAAATACATTGTACCTTTTTTGTACAGTCTACCTAagtgttaaaaatgtataaaatgccTGAATGAGATGCTCTTTTGTATTTTagtcatattt

Function

GO:

id name namespace
GO:0017040 N-acylsphingosine amidohydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245151.2 True 2165 mRNA 0.41 5 3376610 3383122

Neighbor

gene id symbol gene type direction distance location
olfml2b olfml2b,LOC107718167 coding downstream 60589 3297813 ~ 3316021 (-)
LOC103033918 LOC108431152,LOC106599103,LOC106568909,LOC108278312 coding downstream 159589 3189007 ~ 3217021 (-)
LOC111193343 prg4 coding downstream 197016 3163711 ~ 3179594 (-)
c1h1orf27 cunh1orf27,LOC103031066 coding downstream 261841 3099846 ~ 3114769 (-)
LOC103034573 pla2g4a,LOC107718137,LOC107677770,LOC107693742,LOC107722605,LOC107589895,LOC107594671 coding downstream 339776 2986333 ~ 3036834 (-)
LOC103028436 NA coding upstream 107750 3490872 ~ 3503293 (-)
LOC103032346 NA coding upstream 133502 3516624 ~ 3554189 (-)
LOC103032017 LOC108441573,LOC107693752 coding upstream 221064 3604186 ~ 3666404 (-)
ap1s3 NA coding upstream 455747 3838869 ~ 3849326 (-)
serpine2 NA coding upstream 543978 3927100 ~ 3957131 (-)
G1211 NA non-coding downstream 2995 3368803 ~ 3373615 (-)
G1013 NA non-coding downstream 78964 3296240 ~ 3297646 (-)
G1017 NA non-coding downstream 81828 3294576 ~ 3294782 (-)
G1016 NA non-coding downstream 86692 3289505 ~ 3289918 (-)
G990 NA non-coding downstream 188628 3187503 ~ 3187982 (-)
G1214 NA non-coding upstream 2251 3385373 ~ 3386231 (-)
G1224 NA non-coding upstream 91067 3474189 ~ 3474864 (-)
G1238 NA non-coding upstream 195107 3578229 ~ 3585540 (-)
G1234 NA non-coding upstream 212621 3595743 ~ 3599731 (-)
G1247 NA non-coding upstream 235110 3618232 ~ 3650378 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other downstream 406270 2910754 ~ 2970340 (-)
G807 NA other downstream 776099 2550216 ~ 2600511 (-)
znf414 NA other downstream 942209 2423713 ~ 2434401 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other downstream 1448355 1920480 ~ 1928255 (-)
yipf1 yipf1 other downstream 1503483 1864515 ~ 1873127 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other upstream 11082 3394204 ~ 3445386 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other upstream 499248 3882370 ~ 3909671 (-)
G1308 NA other upstream 716643 4099765 ~ 4101566 (-)
LOC111193794 LOC108442858 other upstream 883879 4267001 ~ 4271970 (-)
LOC111193783 LOC108442858 other upstream 893787 4276909 ~ 4321340 (-)

Expression


Co-expression Network