LOC103039590 (LOC103039590)


Basic Information

Item Value
gene id LOC103039590
gene name LOC103039590
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 2010269 ~ 2011178 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245170.3
CTAAAGCTTTTGCTCaaactgagagaaacacatCTCCACACATCTGGACACATCGCCACACGCTCCGAAACTGTCTAGTCGAAACATGCAGCCTCTTCAGAAGAATGGACCACGCTCTACATCCTCCAGCCTCCACCTGTACACCACCAGTGCCTTACTAATCTTATGACAGGTCGTCTCAAAGTGTGTTCCTGCTGACGCCAATCGCTCCTAATCAGTTTAATGCTTCAGGAGGACCATGTCCAAGTCTGTGGATCATGTCAAGAGACCCATGAATGCCTTCATGGTGTGGTCCAGAGGCCAGAGGAGGAGGATGGCGATGGAGAACCCCAAGATGCACAACTCTGAGATCAGCAAGAGGCTGGGAGCCGAGTGGAAGCTCCTGTCCGAGGCTCAGAAGAGACCCTACATCGACGAAGCCAAGCGACTCCGAGCCCAGCACATGAAGGAGCATCCAAACTACAAGTACAGACCCAGGAGGAAGTCCAAGGGCTTGCTGAGGAATGACAGGTTCACTTTTGCTTCTCATCAGTTCCTGGGAGAACCAATTCCAGCCAGAGACGTTCTAACCTACTGTCCGGACAACCCCAGGTACCTCCATCATCCACCAGTGTCCGCACAGTCGTCACAATTCTTCACTGGAACCCACTTCAGCACCGCTGCTGGAGTCCAGAAAGTCCAAGAAATAATGCCCCATGCTCTGTACACCTCCACGCTGGGGTACCATAATGCACTCTTTGGTACACTGGGATGCCCAGCACAGGCAGGCAAACCTGGGTATGTGGTGCCGTGTAACTGTCCGCTGTGGTCAACGTCTGGTCTGCAGCCGCCGATAGCTTATTTACTCCTTCCAGGCGTGAGCAAGACTGGACTCACTGGACTCAACTCAAACTGCTCAGCAGCTCTGTGA

Function

NR:

description
transcription factor Sox-14-like

GO:

id name namespace
GO:0021854 hypothalamus development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245170.3 True 910 mRNA 0.53 1 2010269 2011178

Neighbor

gene id symbol gene type direction distance location
LOC103039897 NA coding downstream 5097 1999100 ~ 2005172 (-)
LOC103038761 NA coding downstream 42599 1952738 ~ 1967670 (-)
LOC103041746 LOC103041746,LOC108432452,LOC107602511 coding downstream 147542 1860413 ~ 1862727 (-)
ndc1 ndc1 coding downstream 152045 1835741 ~ 1858224 (-)
LOC103044599 glis1,LOC107602512,LOC106952155 coding downstream 177237 1796561 ~ 1833032 (-)
LOC103039280 stk25b,LOC108432500,LOC107585675,LOC107722570,LOC108278137,LOC107693719,LOC107589848 coding upstream 27708 2038886 ~ 2052143 (-)
thap4 thap4 coding upstream 56800 2067978 ~ 2073643 (-)
LOC103036651 LOC103036651,LOC108432502,LOC105899541,LOC105028795,LOC108278136,LOC107718120 coding upstream 92292 2103470 ~ 2112159 (-)
LOC103037376 NA coding upstream 313428 2324606 ~ 2372955 (-)
LOC103036044 LOC108432506 coding upstream 365069 2376247 ~ 2395365 (-)
G608 NA non-coding downstream 115816 1877509 ~ 1894453 (-)
G589 rps8,rps8a,LOC107674081,LOC107688507,LOC107602544 non-coding downstream 246646 1757980 ~ 1763623 (-)
G504 NA non-coding downstream 253955 1754379 ~ 1756314 (-)
G502 hectd3,LOC107729394 non-coding downstream 256415 1751182 ~ 1753854 (-)
G496 hectd3 non-coding downstream 272352 1736394 ~ 1737917 (-)
G616 sept2 non-coding upstream 5378 2016556 ~ 2035389 (-)
G644 NA non-coding upstream 55397 2066575 ~ 2067409 (-)
LOC111192756 NA non-coding upstream 65897 2077075 ~ 2079605 (-)
G653 NA non-coding upstream 81245 2092423 ~ 2092992 (-)
G655 NA non-coding upstream 85042 2096220 ~ 2101575 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other downstream 82014 1920480 ~ 1928255 (-)
yipf1 yipf1 other downstream 137142 1864515 ~ 1873127 (-)
LOC111197534 NA other downstream 1154109 855579 ~ 856160 (-)
LOC103037308 LOC108440474,LOC108278112,LOC107585786,LOC107669856,LOC107745208 other downstream 1339554 589669 ~ 670715 (-)
znf414 NA other upstream 412535 2423713 ~ 2434401 (-)
G807 NA other upstream 539038 2550216 ~ 2600511 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other upstream 899576 2910754 ~ 2970340 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other upstream 1383026 3394204 ~ 3445386 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other upstream 1871192 3882370 ~ 3909671 (-)

Expression


Co-expression Network