LOC103041746 (LOC103041746,LOC108432452,LOC107602511)


Basic Information

Item Value
gene id LOC103041746
gene name LOC103041746,LOC108432452,LOC107602511
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 1860413 ~ 1862727 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245177.3
ATTATCAGGCAATGTCTTGTTTCATAGGGTTGCAATTATTTTTATCACCAGTGTCATCAGTTGAACTGTAGCCAGAGGTTTGTAATATCCAGTGTCTTTAGCAGCTGCGGCCGTGTTCTCAGCCCGCCTGTCACCCTCAATCATGGaggattaataaataaagaaataaatctttTCATAGACTGACAGTGTCAACGACGAGGGTGCACTTTCCTAATTAACATAATAGACAAATGGTGACACTCGAAACTGTGTCAGCCTGAGGTGTGTCCTAATTAATGGTCATTCTAGCCTTGGCCTAGAGTTACACTGCAGATCTTTCCAAAGCCATAAGCTCCGCCGAGCCGAGGGCAGCGGGACAGCAGGCAAGGCGAGCCAAGTCAAGCGGACGACGGAGAGAAGAAATCTCATTTTCTGGATTATCAAGCGCATGACTGGATTTCTCCTGCCATTTTCCTGCTTCACTACACATGGAAGGCCTATTTATAGAGACTCCAACCCTCAGACACCTTCTTCAGGTCAAAGCCATGGACTTCCAGCATCGACTTCCAGCATTTTGACATGGGGGACGCGAGCATGACAAGTAAAGTGGAAAAGGTGTCCAAATACGAGACACTAAAGATGTTGGAGAAGTGTCGGCGGGAACGGGACGACGCCGTCCAGCGCGAGGGAGCCCTGAGGGAGAAACTGAGACAATACGAATCTAGGATGAGGTCGACCGAGTCGCTCAAGCAGAAGGTGAAGACTCTCACCCAAGACAACAAGGACCTCCGCAAGCAGGTGAAGACCCTCCGGGCCGAGCTGGGGCTGGAGACCAGCCCCAAATTCAACGGCAAGACCACCAAGGACATCATCAACGACCTGCACGAGAAGGAGCGGCAGTGCAGCTCGCTGGTGGAGAAGACGGGCAAGCTGAGCGTCACCATCGACGAGCTGACCTCCGAGCTGGCCAACACAGTCACCTCCAAGACCCTGCTGGAGGACCAGGTGCAGTCCCTGCAGCAGAACCTCAAGGACATGACCAACAACCAGCGGCGGCTGCTGAAGCTGTGGGAGGACAGGAAGGCCCAGCAGCGTGAGCCACTGTCCCTGCCTGCCCTGCCGCAGAGACCCGGCCACAGGGCTTCGTCCCATAAGGCCGTGCAGACCGAAATGTCCATCGGCTCCACGCATATACTGCCCACCAATGCCTTCGAGACCAAACCCAGACAAGACAATGAGAAAAACAGGAGTCTGGGGAGGCGGAACATCACCCTGCCCAACGGCAGCCTGCGGGAAAAAACGGCTTTGATACAAAATGAGAGTAAACCTGTTCACAACTGACCGCAGGGAGACTGTCTACTGTTTACTGTTCACtgtgtacttttatacttagcTGCTGTCTTATATCCATGACACTGATGACACTGATAAAAATGAATGCATGCCTATGCAACAAGACAGTGCATGACAAACAACCTCAGTGATGTACATCAGATCAACTAATCCTGTAAATAGGTGCATTCTCTACAAACGTGCACTTCTGTACATTTTAATACTCAgatactgtttatttgtgtaatttATCAAATAGAGATTCCACATTAGTGGGAAATTGGGAAAAAGGCAGAGAAGGCATGCACTTTtcctcaccctcctagtgttgggtgTGTTACTAGTGATTAGAGGGTgaggtaattggccttccaaattaaggagaaaatgtgataaaaattaGTATAAAGTGTGGCATGTACAAAGATTATATCAAAGATTatcatttgattatttttttcaatttgtaaATAAACTAGGAATTAAACACTCATagtttttactgcagagaatgtaaagaatatattttatgtgttgACATTTCAGACTGCATAGTATAAAGgcattataaattaaattataaattgcTGCTTGGCATACATGAAATACTGTACATCTACCAAAGATTATATCTTATATATGTAAATTTTGGATCATGTGGTAAAAatccctgtatttttttaaatactgcaaTATATGCAGAACAAATGTTGCAGTTGTTCcaatttgaaatttgaaaatgGGAAGCCATCCCTTTGTACTTTTTGGATTATCTGATTTACTAACTTCATGTAaaacctggtaaaaaaaaaaaatcctgtttttttaaacattgcaaAACATTGAACAAAATATGTTgtagtctctgttttttttttctaaaatggtGCAACCCTAGGGACATTTAACAGATCTCTTAACATTATGTTCAGGTGTATCAGGGATTTGTTAGGTGTGCCATCTCTCTGGACccttttgattaattaaaacatgtaaatcca

Function

NR:

description
uncharacterized protein LOC103041746

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245177.3 True 2315 mRNA 0.44 1 1860413 1862727

Neighbor

gene id symbol gene type direction distance location
ndc1 ndc1 coding downstream 2189 1835741 ~ 1858224 (-)
LOC103044599 glis1,LOC107602512,LOC106952155 coding downstream 27381 1796561 ~ 1833032 (-)
LOC103045337 NA coding downstream 68285 1783204 ~ 1792128 (-)
best4 best4,LOC106569841,LOC108262062 coding downstream 87522 1764264 ~ 1772891 (-)
acadm acadm,LOC107674066,LOC107602542,LOC107688505,LOC107584839 coding downstream 131027 1719812 ~ 1729386 (-)
LOC103038761 NA coding upstream 90011 1952738 ~ 1967670 (-)
LOC103039897 NA coding upstream 136373 1999100 ~ 2005172 (-)
LOC103039590 LOC103039590 coding upstream 147542 2010269 ~ 2011178 (-)
LOC103039280 stk25b,LOC108432500,LOC107585675,LOC107722570,LOC108278137,LOC107693719,LOC107589848 coding upstream 176159 2038886 ~ 2052143 (-)
thap4 thap4 coding upstream 205251 2067978 ~ 2073643 (-)
G589 rps8,rps8a,LOC107674081,LOC107688507,LOC107602544 non-coding downstream 96790 1757980 ~ 1763623 (-)
G504 NA non-coding downstream 104099 1754379 ~ 1756314 (-)
G502 hectd3,LOC107729394 non-coding downstream 106559 1751182 ~ 1753854 (-)
G496 hectd3 non-coding downstream 122496 1736394 ~ 1737917 (-)
G476 ptbp1a,LOC107729315,LOC107584874,LOC108432475,LOC107602545,LOC107674042,LOC107688524,LOC107732511 non-coding downstream 337668 1511045 ~ 1522745 (-)
G608 NA non-coding upstream 14782 1877509 ~ 1894453 (-)
G616 sept2 non-coding upstream 153829 2016556 ~ 2035389 (-)
G644 NA non-coding upstream 203848 2066575 ~ 2067409 (-)
LOC111192756 NA non-coding upstream 214348 2077075 ~ 2079605 (-)
G653 NA non-coding upstream 229696 2092423 ~ 2092992 (-)
LOC111197534 NA other downstream 1004253 855579 ~ 856160 (-)
LOC103037308 LOC108440474,LOC108278112,LOC107585786,LOC107669856,LOC107745208 other downstream 1189698 589669 ~ 670715 (-)
yipf1 yipf1 other upstream 1788 1864515 ~ 1873127 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other upstream 57753 1920480 ~ 1928255 (-)
znf414 NA other upstream 560986 2423713 ~ 2434401 (-)
G807 NA other upstream 687489 2550216 ~ 2600511 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other upstream 1048027 2910754 ~ 2970340 (-)

Expression


Co-expression Network