LOC103046123


Basic Information

Item Value
gene id LOC103046123
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 13574774 ~ 13581467 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260889.3
tgattatattccagaggtgttcaatttggtaaaatcaaagaaactcataattttttaagtggtctcaaaTTTTTTTCCTTGAGCTAAATATAGGCGATATAGgggtataaagtactagagacagacttgagtaaaagcacatgtgctctatcaaaaaactGAATTGAGTAGAAGTGCTTCTTTAGGCACCAAACTTAAGTGAAAGtactaatatatttaaagtttctaagccttttctaaaatatgctgttctgaaagttctgaaagtaaaagtacagtactgtgttctGTAGTAATTACAAAAAGCAgtgaaaaaaagagcaaaaggcAGAACGGGAGCAGAGTGGTTGTCTTATGAGGTCATCATGATCTCTTAATTCACTCAATGGTGAGCAGCTTCATCAAGCCTGttgacagtgcagagcatctatCGCTCTGGCAGTAATAATGTGAGTTTGGAATAATTTAACAAGTAACGATGTCACaaatcaaaaaaaaatcaccggagtaaaattataaaacttacaaaaaatatgtagtggagtaaaagtggaagtatgagaaaaaaaaagaatactgtAATAGATACAGATGTAGCATTGTACTATACCTGAGTACAGTAGGGAAGTAGCTCTACTTctttactatacatctctggtTATTGAGTTTTGTACCTAGTAGAAACAACTCGTCAGTAGTTTCAGGCTAGGTTACACAAAAGATAGTAGCCTCCAGCGACTGGACCTGTCACCTGTTTACAGTAAATTTCCCTGATGGCTTTGGGACCATGCAGTCTAGATCTACAAAAACGGCGTGTGGAGCTTGTGAGGGACTGGAGCAAACACATAAGCTCCCTTCTGGACCTCCTCTTCAATATGGGAACAGTGACCGAGGAGGACCTCAGCCTTATAAGAGGTGGGGGACATACAGGGGAGCTGGACTGCATGAGGACGCTTCTGGATGTTCTACAAGGCAGAGGAGAGGAGGCATGCCGTGCCTTCCAGTTTGTGTTGTCCAACTTCAAGACTTCGACTGCCAGTGAAACTGGAAAAGCCAAGCTCTTCCCGCAGAACACACATAACATGCAGAAAGTACTTAAGGAAGGTCTCCAGAAACACAAGGACATCCTAGCTAAGCACCATGGTCCAGTATTATCCAGCTACCTCAGCTCTGCTAGACAAACCTCCAGATCTGCTGAGGTGGACACTTTCACAGACATCACTTTCTGTAGGCAGGTGGGATACCCAGTGCCACTGCAGTACCAACACGAGGCAACTGTGGTCGGGGATTCTTTCAGAGCAAGCAGAGATGAAGCTAAAAGAAGGGGTCAGACCTGTGCTTTTAGAGAATTGTACCAGAGTCTGCTTTGTGTCTCAGAGGATGGCGTGGCACTGCTTTCAGGGGTCGCTGGAAGCGGCAAAACTACAGTGATTAAGCGTCTAGTTCAACAGTGGGCTGCAGATGTAGATGCACAAAAAATCGTCCTGTCCATGTCTTTCCGTGAACTAAGCTTGATTACTGAGCCCCAGAGCCTGCAAGGACTTCTGTCGGATCATTATAGCCATTTAAAACCTGTCCTACCAGAGTTATTGACTTCAACCCAGGGCCAGGTTGTGCTTATCCTGGATGGGCTTGATGAGTTCTGTTTCCCTTTGGACTTTGAACGCACCCCTAAATGCTCAGACCCTGAGCGGGAACTGTCTGTGGGTGCTCTGGTAGTGAACCTGATAAAGGGCAACCTCTTGCCTGGCACTTCAATTCTCCTCACTTCCCGTCCCCATGCTGTTGCCAAAGTACCCCAGCTGCTGGTCAGGCAGTTCTACAGTGTGTTAGGGTTTTCCCCAGCTCAACAGAAGCAGTACTTTGAGCAGAACTGCAGCTCCAGCCAAGCTGCAGCTACAGTGTGGAGTTTTGTGTCCTCCCACAAACCAATTCAGCTTATGTGCCACATCCCTGCCTTCTGCTGGATTGTCTCCACGGCTTTGCACGAAGGCACTTCTTGCCTCTTTTTTGACACTGTACAGACGGGTGCTGCATCACAAGAAAATGGAAGTGACAGCACTAAGGAAGTAAGTGGTGCTGAATGCTCTGATCAGTCCTCATCTGATCCTAATGCATTGTTGGCAAATGGTCCGGCTGCTCAGAGTGTCTGCAGGCCAACCACTGTCACTGAGATCTACTGCTGCTTCCTTAAATCCATCGTGGTCTTCCATGTGGGTGGATGCATGGAGGGCATGCACCTCAACAGGCTTCAGGATGCCCCTCGTGTCTTAAGGGAGAACAAAGGCATGCTCAGGTGTCTCGGCGCCTTGGCCTTCAGAGGCCTGCTGGAGAGGCGATTTGTCTTTGACCTCTCGGACCTAAGCTCGTTCTCACTGGACAGCTGTGAGCTAACACAAGCGTTCACAGTGGAAGTCCTTAAAGAGGACAAAGCTTCTCTCACTTACGAGAAGAGCTTCCATTTCATTCACACCAGTGTGCAGGAGTTCCTAGCTGCACTTTATTATATGCTGGAATCATTCTCAGGGTCGGATCCATTCTCAGGACTTAAGCCAGCAGTGCCAGCATTGCACAAGCATCTGATGTCTTTTGTTAACAAGCTGCGACGGCCAAAACGAGTCTTACACAAAAGAGTCAAGAAAGCTTTCCGTTGTGGAGAGAGTCATCAGTCTGGACACATGGACCTCTTCTGCAGGTTCGTGTCTGGCCTTTTCGTCCCTAAGACCCGCTTCATCTTGGATGGTCTTTTCTCTGGCGAGCACAGGCCTCGACTGGCCTCGTGCATGAATTTGCCCTCTGTGTCCCCTCCATTCGTTGTGAAGTTGCTACGTTCACAGCTTCacagctccagcctcagccCAGAGAGGCAGCTGAACATATGCCACTGCCTTTACGAGGCTCAAGACTCCGAGCTGTCCCTGCATCTCCAGCACTGGCTGACTGTTCTTTCCCAGCAGACATCAGGACAGTGTGCTTTACTGAACAGAGACTGGAGTGAGCTGGCTTTTCTGCTGCAGCTCTGCCCAGATCTGCAGCAGCTGAAACTGGATGCTCAGGAGCTGGATGCTGTAGGACTACGCAGACTGCTGCCTGTTCTTCCCCTCTTCTCCACTCTCAGTCTTGCACAGAATCCTCTTGGTCCAGAGGGAGCAGAGGTGCTATCTTTGGCACTGCGCAGTCCAGATTGTCAAATTGAGCATCTGTGGGTGGTATCAACAGACCTGGGCTGTGAGGGATTCAGAAACTTGGCAGAGGGACTTAAAGACAATCGAACAGTGTTTGATCTCCGGATGGCAATAAATCATATTGGTGACACTGGAGCTGCCTGCCTTGCTGAACTATTGAAGACTAATCGCACTCTGAGAGATATCAGactcaGAGATAATTTAGTGACTGACAGCGGGGCAGAACTTCTGATGGAAGCCCTAACGGAGAACACCACCTTAGAATACCTCTGgctgtttgacaACAAGCTTTCCAAGGAGTGTGTTCAGAAGCTGAAAGAATTTTCAAAGAGCAGATCCACACTTGACATTAAAGTCTGTTTCTGAATCGCACCCAggaacatatttcatatgtggGACtagtattagtaatattacTGAGACATGCTTTTCTTGTATTATGTGTGGGTCATAAATTGGTGAGAGGGCATATGTGCAACTAATAATGGATTTTATGTTACGTTTTTCTTCCTTTTACAAAGAGGCACATTAcggtttaaacaaaaaaaatatttttatgtaaattaaagattttattcttttatgAATTGAATATGTAGCCATAAGACCAAGTTATTATGAAATCACCATTGTTTTAAATGGAAGAATATGCAGGGGTCTCAATAGGGCTAGATAACCAAACTGTTCACGTACATTCTTGGTATTCTGAGGCTTTGAACAATGTCTGCATCAATTCATCTGCATCACATGCAGGGGAGAGAAGGGAAAAGtaaatactgattttttaaTGTGCTGTCATGTGATTTTAAGATTTACTATGGGGAAATAACTGACCTTTCTTATATGTTGCTTTTCACCCCACCATTCCTTTCAGCCAACCAAATCAAAACTTTTGGCTACTGTGGACAAGGCTACATTTCTACTGGGAATTCTCAGTATTCATTTTTTAGATTGTAATACCTTATACATTATCTTCTGTGGTCTAACTGTTAcagtgaaactgtgatttaaatctatttattttcagattatacttttgtaatgtttatatacaataaagtgttgtatgttttcagttttt

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260889.3 True 4266 mRNA 0.44 7 13574774 13581467

Neighbor

gene id symbol gene type direction distance location
LOC103047347 pitpna,LOC107685084,LOC107743636,LOC107548584,LOC107756865 coding downstream 33510 13526419 ~ 13541264 (-)
LOC103047661 LOC101071669,LOC106934088,LOC102221054 coding downstream 61413 13484174 ~ 13513361 (-)
tmem160 tmem160,LOC106537151 coding downstream 107082 13459700 ~ 13467692 (-)
ap2s1 ap2s1 coding downstream 409669 13153019 ~ 13165105 (-)
LOC103022701 tnfrsf19,LOC108415268,LOC103474716 coding downstream 868665 12668035 ~ 12706109 (-)
myo1c myo1c,LOC107756890,LOC107743634 coding upstream 9628 13591095 ~ 13658924 (-)
LOC103043894 LOC108426997,LOC107589740 coding upstream 122516 13703983 ~ 13713375 (-)
LOC103025751 LOC108427003,LOC107730853,LOC107582235,LOC107683286,LOC108277959 coding upstream 153006 13734473 ~ 13750279 (-)
LOC103035060 LOC108440363 coding upstream 556982 14138449 ~ 14168938 (-)
git1 git1,LOC107685085,LOC107669736,LOC107548582,LOC105889552,LOC106580798 coding upstream 673848 14255315 ~ 14279290 (-)
LOC111197623 NA non-coding downstream 189827 13381254 ~ 13384947 (-)
G3356 NA non-coding downstream 423770 13147138 ~ 13151004 (-)
G3354 NA non-coding downstream 478580 13095478 ~ 13096194 (-)
G3337 NA non-coding downstream 539695 13034489 ~ 13035079 (-)
G3324 NA non-coding downstream 575134 12999136 ~ 12999640 (-)
G3459 prpf8 non-coding upstream 92641 13674108 ~ 13674572 (-)
G3469 NA non-coding upstream 99052 13680519 ~ 13721025 (-)
G3474 NA non-coding upstream 108294 13689761 ~ 13691882 (-)
G3610 NA non-coding upstream 666175 14247642 ~ 14247859 (-)
LOC111190296 NA non-coding upstream 699565 14281032 ~ 14318897 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other downstream 2402 13544500 ~ 13572372 (-)
LOC111197384 NA other downstream 439133 13130212 ~ 13135641 (-)
sgcg sgcg other downstream 793609 12759066 ~ 12781165 (-)
G3297 sacs,LOC107593479,LOC107740366,LOC107670382 other downstream 816261 12740144 ~ 12758513 (-)
LOC111192956 LOC108412924,LOC108444125,LOC108444119,LOC108416439 other downstream 1634030 11924002 ~ 11940744 (-)
LOC111189390 NA other upstream 542706 14124173 ~ 14133237 (-)
G3612 NA other upstream 702156 14283623 ~ 14284225 (-)
slc6a4 slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 other upstream 799288 14380755 ~ 14471752 (-)
LOC103022652 LOC103022652,LOC108425821,LOC108277503 other upstream 2696538 16278005 ~ 16282632 (-)
ercc2 ercc2,LOC107743694,LOC107601732 other upstream 3063025 16644492 ~ 16653968 (-)

Expression


Co-expression Network