LOC103047347 (pitpna,LOC107685084,LOC107743636,LOC107548584,LOC107756865)


Basic Information

Item Value
gene id LOC103047347
gene name pitpna,LOC107685084,LOC107743636,LOC107548584,LOC107756865
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 13526419 ~ 13541264 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260893.2
TGAATttaaagaaataacaaaaatccaGGAACTGGAGGGAAGCGTTTCTCTGAGGGGGAGAAAAGCGGCCGAGTTTGGACCTTTTGAATGAGGCGGACGGCGAGACCAGCGCGAGAAGATGCTTATTAAAGAGTTcCGAGTTGTCCTTCCTATTTCCGTTGAAGAGTACCAAGTGGGGCAGCTATTCTCTGTAGCTGAGGCCAGTAAAAATGAGACCGGGGGAGGAGAAGGGGTGGAGGTGCTGAAAAACGAACCCTATGAGAAAGAGGATGGGGAAAAGGGACAGTACACACACAAGATCTACCACCTGCAGAGTAAAGTACCAACGTTTGTGCGGATGCTGGCTCCATCAAGTGCCCTGAATATCCATGAAAAGGCCTGGAATGCTTACCCATACTGTCGCACAGTTCTCACAAATGAGTACATGAAGGATAATTTTATGGTTATGATTGAGACGTGGCATAAGCCTGACTTCGGTGACCAGGAAAATGTACATAAACTTGATCCTGAAACCTGGAAGAAGGTGGAGGTTGTTTACATTGATATTGCAGACAAGAGTCAAATTGACGCTAAGGACTATAAACAAGATGAGGATCCAGCCACATTTAAGTCTGTGAAGACTGGACGAGGACCTTTAGGACCTGAATGGAGAAAAGAGCTCCCTCAGAAGACAGACTGTCCTCACATGTGTGCCTATAAACTTGTCACCGTCAAGTTCAAATGGTTTGGCCTGCAGAACAAAGTGGAGGGCTTCATCCACAAgCAAGAGAAGCGTCTGTTTACCAACTTCCACAGGCAGCTCTTCTGTTGGCTGGATAAGTGGATTGATTTGACAATGGAAGACATTCGGCGGATGGAAGAGGAGACGCAAAAGGAACTTGATAAGATGCGAGAAAAGGACCCAGTGAAGGGGATGTCTGCTGCAGATGACTAAGGCCCTGCGGCTGGGACTGTATATTGTCCAACCAGCAGCAGTATTGTTTGTCCCAGACAAGTGGTGTTAGAGAGTCCATCTCTCCTGCTCTTTATGGTCCAGTCCATTATGGTGCCTCTCTTATCTCCTCCCACACCACGGAGGACTTACAGGCTGCAGATTTACACAGCTGATTCTTACACTAATCAACAACGTATCATGTTGTcacttttatataatttactGCTGTTTACTTTGAGAAATTATTTTGTGATCACAAATTACCCCACTTTTTTTTACGGAACAAACATAGTTTTGGtttgttataattttttatatttgtactgTTTTACACAATTTGCATCGTCACTGACATAACATTTACATAGCACTCTGCAGAAGTTCTcacatttgttcttttttttttttccccactacTGATTAGCTCCATTCACTGCTTTCAGCTGCATTCACTCCACTGTGTTTACCTAAGCTGCCTTAAGGGTGACATGGCCTAGTTAGTTACCCTGAGCAAATCTGGGTAGGTGGATAGGTCTCCAAGGGCTTAGTCCCTAGCCAGCTCCTAACACTCAGTCTGAATAGTATGGTGTAACTGTGTTTACATGAATTAACGTCAACCTGATTTAATATGCATTAATGGTCTGTGGGAAGTGAAAATGGGGTTCTCTTAGCTCTGAGTTGAAAGTGGTTTCTTTCTGGTGATAGGAAGCCATATCAGGGCTGGGGTCATTTTGAATTGGGTCTTTTTGTTGGAATCATGTACTTTTTGTATTAAAACTGGGGCACGTCaactgtattgtatttattcactgggtattttacagttttgtcaCATTTTCTGTTATGGGATAAAACGACACTGTATGTGTTTACTTGCCTGATTTATGTTCTCCCCTTCTCCCAATTATTATGATCTGAACcggttaaaataaataagatgaattgta

Function

symbol description
pitpna Enables phospholipid binding activity and phospholipid transfer activity. Involved in phospholipid transport. Located in extracellular exosome.

NR:

description
PREDICTED: phosphatidylinositol transfer protein alpha isoform isoform X2

GO:

id name namespace
GO:0006810 transport biological_process
GO:0007409 axonogenesis biological_process
GO:0009790 embryo development biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260893.2 True 1881 mRNA 0.43 12 13526419 13541264

Neighbor

gene id symbol gene type direction distance location
LOC103047661 LOC101071669,LOC106934088,LOC102221054 coding downstream 13058 13484174 ~ 13513361 (-)
tmem160 tmem160,LOC106537151 coding downstream 58727 13459700 ~ 13467692 (-)
ap2s1 ap2s1 coding downstream 361314 13153019 ~ 13165105 (-)
LOC103022701 tnfrsf19,LOC108415268,LOC103474716 coding downstream 820310 12668035 ~ 12706109 (-)
LOC103022193 LOC107699842,LOC107592657,LOC107555278 coding downstream 899965 12615654 ~ 12626454 (-)
LOC103046123 NA coding upstream 33510 13574774 ~ 13581467 (-)
myo1c myo1c,LOC107756890,LOC107743634 coding upstream 49831 13591095 ~ 13658924 (-)
LOC103043894 LOC108426997,LOC107589740 coding upstream 162719 13703983 ~ 13713375 (-)
LOC103025751 LOC108427003,LOC107730853,LOC107582235,LOC107683286,LOC108277959 coding upstream 193209 13734473 ~ 13750279 (-)
LOC103035060 LOC108440363 coding upstream 597185 14138449 ~ 14168938 (-)
LOC111197623 NA non-coding downstream 141472 13381254 ~ 13384947 (-)
G3356 NA non-coding downstream 375415 13147138 ~ 13151004 (-)
G3354 NA non-coding downstream 430225 13095478 ~ 13096194 (-)
G3337 NA non-coding downstream 491340 13034489 ~ 13035079 (-)
G3324 NA non-coding downstream 526779 12999136 ~ 12999640 (-)
G3459 prpf8 non-coding upstream 132844 13674108 ~ 13674572 (-)
G3469 NA non-coding upstream 139255 13680519 ~ 13721025 (-)
G3474 NA non-coding upstream 148497 13689761 ~ 13691882 (-)
G3610 NA non-coding upstream 706378 14247642 ~ 14247859 (-)
LOC111190296 NA non-coding upstream 739768 14281032 ~ 14318897 (-)
LOC111197384 NA other downstream 390778 13130212 ~ 13135641 (-)
sgcg sgcg other downstream 745254 12759066 ~ 12781165 (-)
G3297 sacs,LOC107593479,LOC107740366,LOC107670382 other downstream 767906 12740144 ~ 12758513 (-)
LOC111192956 LOC108412924,LOC108444125,LOC108444119,LOC108416439 other downstream 1585675 11924002 ~ 11940744 (-)
sarm1 sarm1,LOC107669752,LOC107743642,LOC107756984,LOC107685076 other downstream 2232537 11281209 ~ 11293882 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other upstream 3236 13544500 ~ 13572372 (-)
LOC111189390 NA other upstream 582909 14124173 ~ 14133237 (-)
G3612 NA other upstream 742359 14283623 ~ 14284225 (-)
slc6a4 slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 other upstream 839491 14380755 ~ 14471752 (-)
LOC103022652 LOC103022652,LOC108425821,LOC108277503 other upstream 2736741 16278005 ~ 16282632 (-)

Expression


Co-expression Network