tmem160 (tmem160,LOC106537151)


Basic Information

Item Value
gene id tmem160
gene name tmem160,LOC106537151
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 13459700 ~ 13467692 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260895.3
AACTCCTCTACAGTGAAAGTCCGCTCTTTTTTGCGCTCGTTGGTCGGAGGGGAGGGTTGAGAGGCTGCAGGTCGTGTTTGGGTGTTTATGGAGGGACATGGCGGCGCTGTGTTGGTTATCCGGTCGGTATCTGCGGCGGTTCGTCTCTCCGCTCGTTCAGAGCGTCAGATGGCCTGGAGCTGCGCGCGCTGAACGCCGCCTGCAGCGCGTGTCCTGCCGCGGGCTCGCGGACAAGAGCGCGTGGAGCAGAGCCCGGATGGAGccgcagcaacagcagcagttcaCTGAACTGGACAAGGCGGACGCGCtgATGCTAAGGAAATCCCATGAAACTGgATTCCTGTCATGGTTCAGAAATGGTTTACTGGCTACTGGGATTGGAGTCATTGCCTTTGTACAGAGTGACGTGGGAAGAGAAGCAGGATATGCTTTTTTCGTCcttggaggagtgtgtgtgtcgtTTGGTGGGGCGTCTTACGTGGGCAGCTTGCTGACCCTAAGAAGAATCATGCTGATCTCTCTGCCGGCTGCACTGCTCCACACTGCTGTGGTGTCCAGCGTCGCCCTCTTCTGGCTGTGTGCGGTATCCCTCTACATCGGCCGCCTTGAAGTGGAGATCATCCGGGATGAGGACGAGGATGAGGAGGGTGGGGATGAAGGTGGCGAATGTGCAGAGTGCAGGGCTCGGCGAGACAGACACCACACGGATGAGAGAGGCCAGGACAAGTAACGGAgtgagagtgaatgagagagagagagagaaaaagagagagaagagagagaagagaagtcCTGTGCTGCTTGAGCACTGGTCCAGGACCAGCTTTCTGTACCTGCATCTtattcataaatataaatgcaaacTGTTCTGAGACCAGCTGGAGAAAAGATCACATCAGTGGCAATCGAGAAGTTGCCTATGCTGGTTCATGTTCTAGAGACGTTTGGGATTGGGTGGGGTCTGTTGTACTATAAAATGATCTGTCTTCATTGCTCATTGGTTCATGAGGTTCAAGGCCATTGggaatctgtgtgttttgtgtataaAACATGAAAAGCTGTTTTAAATCAAAGTTGACGACTTGACCTTTCTGTGTAAAGGGATGTTCCATTTATATTTGTTGTTCCAGTTTCAAACTTCTTTACAGTTGTAGTGTTGCTGCATGTTTGAATAGGATGTGCAGAAAAGAGAGACATGTTGCGTTTATAGAGCGAGAGCCCTAACCCTATTCGTAGTTTATATGTACAGCTTCAGCCACTCAACGCCATAAAATCAGAGAAGTCTCAAATCAGttcagtaatttaatttacatgcAGTCAATCATCCACTCAAAACAACATACCAGTACTATGATTTCATAGACCGGAGAAAGgtataaaaatctgattaagaaatctgatagagatgtggattttagCTCAATATTCATATTTCTCAGTCAATGTATACTCTTTAATAGGAGTATTCTTAGTTTTTCAGTCTGTGCATAAGTGAAAACAGGCCATGGTACCGAAAATAAACGAGCAGTGCTTAATACAGTACTCGCAATATGGGGACAAATCACTTTTGGAGCGACACAAACTTATTTCAGTGAatttattactatattttatctgatatacttttttttttaactatattttTGATTATCATACTCTGACTTGATGTGATGAAAATAATGCCTCGTCATGAAGGTTGGGCTTTAGCTTGTTTGTCACATCTTATTCTGTGAGTTTATTGGCTCGTTACAAAGAAAATTTGAACATCTGTCCGATTCATGTAAACTTTTGAATTTTCccattatctgattacccaaGTTCATGTTAACACGTTAATCAGATGTTCTGCTGTAATTAGATTATGAAATGCGTGCAAATTTGCTCAGTACTAACTACCATTTTCATTAACCAGCACAGATGAGCTTTGATTAGGGTCAAAGCTAAATTCTTCAGGATTAGAGCTTTAATCATTCGGCTGTATGAACCCTTTTTATTTGCAGTAGAGGCCCAATCCTCCATTCTTAAGCTGGAGTGTATTTTAAGTATCATTCATGGATCACATAAATGGATCAGTTCAtcattaacatattttttgatTTACGTATATATTGCTTCTTCATGGCATGTTAACCATGTCACTCTACTCAACTATTTGCTTTTGTTATCTGGGACCTAATTTGTGTTCCACAACCACAGCTCCCACCCTCTACACTGAAGGTGGTGACATCACAGCTTTGTCAGACACCCATCCAAGTATGGTACATCTTTAAAGACCATTCTCTCTGGCCAATAAGCATAAAGCAGGAAGCCTAGTAGTGAAGTCAGATAGTGTAGGTGTAGTGTATGTATCATGGCAAAATTGTCGCTTTTTATATGACAATGTGGTCTATACACAAAATCTAGAATGACAGACTAAAAGtatatttctttactttttttttttttaataagtgtaCAAATGATGGGATATCCCTTAAAACCCTTTACCTCAGCAACTGTGCTATAATTGAGGCTGGCATTTTGTCCATTAGAAACATTCAGTTCTTCAACCCAATTTATTAACTTGGGCAGCATCCCATAATTAGGCACTCTGGCTACCAGCCCAGAAGACTTCCCAAATGACTGGTGAGTAAAACTATTTAGGTTCCAGTATGTTTTCCCtgggtttctttttcttttagaatACCTGAAACAAGTTTCAACCCAAAGCTTTTTTTACGTTATcacaaagtgtgtgtttgtgttttgttcaaTTTTCTACAATTATCAAATGATCTGCAATCCTGGCTAATGcaaacattataaaacatcTAGCTTATACTCTGGTAAGATATgcggtaattttttttttgttttttcctttccaGGCCCAGATAAAAccttagttttaaaaaatatatattttaagtggtgAAATGTTCCATGCTCTATGTTCTAATGCTCTATGTCatttgaatcattttttttttctcttctgaagtttttttggtcgtTATCGAaaactgttctttttctttaagCAGTTCATTTCATTTAGTCTGCAAATTGAATTCGTCACCCGAATTAAACCTAAAATTGTTGAATTGCCTACAGCTTCCAGCTCGAAGCAAAACAGACCGTGCATTGTTTTCCAAGAATCTTAGCATGTGAAAGTACTTTAGTATGCGCTGCATTCTTTTGGAGCACCTTTTTGTCTGACTACATTAATTGCAGTGTCTGAAATGGATGCATAGCCTGTAGACGTGGACTCATATGTGCTTACTCTGTTAGATTGCCTAAAGGAGTTTTGTTTCGCCAGAGTTTTTGTTATTCAGAGCACAGATTTCACAGATCACTCAGAATAGGAGCGATGCTGAGCTGTTTGCAGCGTTTCACTCCtttcactgctcgcagctgaAGCTGTATGTATCCTGTCGTTCAGCAAACCAAACATCAATGGTTTGTTCAGTAGGCCTTCTATCGATTGGAATTGAAATTGAAACTGTAACTGTGGCACGTTTTTCTATAGAAATTGACATTCTGAATTTGTCCACAAATTCAGAATGATTTCCCTTCACTGGCATCAAGCCCAGACCAGCTTGGTCAGATAAAAACCTTCAGGGCATAGACTGCACTGGGTAAAACCATTCAGTGCTGTGTGTAGACATTAGCTATTTGCTATTTAAAATGGAATTGCGCTGATTTCTCAATCACAGATGTGTCAATGTGAAGTCATTCAGAGTGGTTTAATGTGAATTGCTCTGTTTATTTGCCTTTAAAATCTTTCTCAGAGAAAATGGTCACAAAAACGTCATCTGGCtttggtttaaaaatgttttggtcTGAATTTCTTTTTATAGATTTGCGATTATTAACATTGCATATATAGAATTATTTTAACTGTATAATGTGTtgctgtattttatgttttttcacaTGCAAAAAAAGTGAACCTATTTCTTGACCAGTCCACCATGATTTCTTGAGCtaaaaaatgatgtttaaataGAATTTATgcgaaataattttttttaaaggtgagAACAGCAAGGAGATACAGAATAATGAGAGATAATGAGCACTTTCGTATCTCTATCTCTACACACAGCAACAAAAGGGAAGAGAAAAAAGGtgacaaacaagactacagttaTGAAGCTATACTCCTACTCTGGTACAGTCCCTACAGTACCATGCAGATCCaagataaacatatataatatataaatacgaGAATACACATACCATTACACCATTACCATTACCTATATACTTAGGACCCTGGTTCAAATAGTTTTCATAGCATTTTATGGACCACTTAAATCACTGAATAAATTTGTATGCATATCAAATATAAATTATGCAGAAATTTTGTGgggaaaaataactttttttttcaagcattCAGACGTTCACAGGTTAAGTCTAGTCCTGCATAAAAATGATTGAATTTGAGAATGCCTGCTGTACTGACTtaagaactgtttttttatgattgtGCTGTAGTGCAATTATATATCACATGTTCAACAAGTTGATCTATGTCTTTAATATAATCGtgagctgcattttttttacttgtgtgCTGGAACACATCCTGTCAGTCATACTTTGGGGTCACAGTTTGGGGTCTTTTGCCTTAGATGaaatgatgattatgattatgatgatgattattttttgttgtttttgattgAACAGGAATTTGCCTTTTGAGTTGTGAGTACCTATAGAGGAGcatgatttacaaaaaaaacaccttattTACACCAGAAAGGAAAGCTGTGACTGGTTTGTGCAAAacctttctatttttattttttgtttctgtattgACATATGAcattcattgtatttttttcattgtatcATTTTTTGTGTGCTGTGATTGTCATGGGATTATAGACTGTTTGTTGATGCTTGACCTTCAGtgctatttactgtacataatgAGGCTAtgaatatgtacataaacagaaCTATAGAGCCAA

Function

symbol description
tmem160 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM160 (transmembrane protein 160).

NR:

description
transmembrane protein 160-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260895.3 True 4970 mRNA 0.39 4 13459700 13467692

Neighbor

gene id symbol gene type direction distance location
ap2s1 ap2s1 coding downstream 294595 13153019 ~ 13165105 (-)
LOC103022701 tnfrsf19,LOC108415268,LOC103474716 coding downstream 753591 12668035 ~ 12706109 (-)
LOC103022193 LOC107699842,LOC107592657,LOC107555278 coding downstream 833246 12615654 ~ 12626454 (-)
gbe1 gbe1,gbe1b,LOC107752276,LOC102793958 coding downstream 1244959 12018015 ~ 12214741 (-)
LOC103031554 zgc:63694,LOC108426967,LOC107752277,LOC107699226,LOC107555275,LOC108278095,LOC107728169,LOC107592659,LOC107699183 coding downstream 1483008 11946470 ~ 11976692 (-)
LOC103047661 LOC101071669,LOC106934088,LOC102221054 coding upstream 16482 13484174 ~ 13513361 (-)
LOC103047347 pitpna,LOC107685084,LOC107743636,LOC107548584,LOC107756865 coding upstream 58727 13526419 ~ 13541264 (-)
LOC103046123 NA coding upstream 107082 13574774 ~ 13581467 (-)
myo1c myo1c,LOC107756890,LOC107743634 coding upstream 123403 13591095 ~ 13658924 (-)
LOC103043894 LOC108426997,LOC107589740 coding upstream 236291 13703983 ~ 13713375 (-)
LOC111197623 NA non-coding downstream 74753 13381254 ~ 13384947 (-)
G3356 NA non-coding downstream 308696 13147138 ~ 13151004 (-)
G3354 NA non-coding downstream 363506 13095478 ~ 13096194 (-)
G3337 NA non-coding downstream 424621 13034489 ~ 13035079 (-)
G3324 NA non-coding downstream 460060 12999136 ~ 12999640 (-)
G3459 prpf8 non-coding upstream 206416 13674108 ~ 13674572 (-)
G3469 NA non-coding upstream 212827 13680519 ~ 13721025 (-)
G3474 NA non-coding upstream 222069 13689761 ~ 13691882 (-)
G3610 NA non-coding upstream 779950 14247642 ~ 14247859 (-)
LOC111190296 NA non-coding upstream 813340 14281032 ~ 14318897 (-)
LOC111197384 NA other downstream 324059 13130212 ~ 13135641 (-)
sgcg sgcg other downstream 678535 12759066 ~ 12781165 (-)
G3297 sacs,LOC107593479,LOC107740366,LOC107670382 other downstream 701187 12740144 ~ 12758513 (-)
LOC111192956 LOC108412924,LOC108444125,LOC108444119,LOC108416439 other downstream 1518956 11924002 ~ 11940744 (-)
sarm1 sarm1,LOC107669752,LOC107743642,LOC107756984,LOC107685076 other downstream 2165818 11281209 ~ 11293882 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other upstream 76808 13544500 ~ 13572372 (-)
LOC111189390 NA other upstream 656481 14124173 ~ 14133237 (-)
G3612 NA other upstream 815931 14283623 ~ 14284225 (-)
slc6a4 slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 other upstream 913063 14380755 ~ 14471752 (-)
LOC103022652 LOC103022652,LOC108425821,LOC108277503 other upstream 2810313 16278005 ~ 16282632 (-)

Expression


Co-expression Network