lrrc72


Basic Information

Item Value
gene id lrrc72
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11304590 ~ 11308672 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015601043.2
GTCCCCAGGTGTCATGTCACTGGTGTTGCCACATGGCAAAAACActtactttaaatttaaaaccacATTGATAGCATTAGTTGACTTGATTTTTCTGAAGAAACATGAAGTAAAGCATGTTGTAAGTCCACagtctctttttatttatctgaaaCTTTCTCAATGTTAGTTTTTATCCATCttgtaaaatgcattaaaaaatgacACTGGGCACCCGCAATTATTCAAAAAATGCACATAAGAGGTACAAAATAATTCAgcctttttaaaagtttaattgaTATAAAAAGAGTGTGTTTCTGCAGAAtcattaaaatgacattttaccCATTTAATCTTTGCATTTGTGTGGTTAAGTTTAGCAGCCACTCTGCCTCACAAGGCCTTTAACAGGCCCCTCTCTCTTAGAtctgctctcaaacacacacacagcgtttCTTGGCAACAGGCTGGTTGTGTGAGACATGGAGgagagtGGAAGCCCTATGTGCAGGCCTACAAAAGACCTCCATATCAGTGAGCTTTATCTGGCAAAAAGGGGTCTCTCAGCTATTCCTGATTTGTCCAAATTCAAACAGCTCAGATATGTATGGCTTAACAACAACAAAataaaGAATTTAAATGGCAGTGTGTTTAACTGCTGTATAGCAGAGCTTTACCTACAGAATAATGAAATCACCACAATCTCAGGGGCCTTGAGGCACCTGACCTGTCTGCGAGTGCTGCTGCTTCACAATAACCAGCTGAAGAATCTGGAGGAGACAGTTGCTGAGCTGAGGCACACACACTGCCTGCAAACTGTCAATTTCTTCCTCAACCCCTTCACACAAGACCCTGAATACCGGGAATATGTGATCCATCACCTGCCATCTGTTCAAATACTGGACAGGAAAGAAGTGAGGCAGGAGGAGAGGAGACATGCTTTCAGACTCTTCTGTTCTGAGAGACTGAGAGTTCTGGACACACTTGCTTTTGGTAGACGTGCAGTTACGCCCCCTGTTGGACGGAAAATAACTCAGGATATGGTAAAATTGAGAGGAtaccttcagaggtcttgtggatTCCATGCCTCAACAGGTCAGAGCTGTTTAGgtcAGCATAGAACAATGTTTCCCTTAAATTGTCCGTCTGAGTACAAATCTGTCCTGCAATTCTCGATCATGGACTGGTGCAGTATGAGAACAACTCAGCAGAGCCCCCTGGAGGAGGAGGGTCCAACTGCACTCAACATCCTTACTGTCAAATTCAGATAACCCATGCACATAAGTGCTGccacaaacattaaaacacttcaGTGATACTATA
>XM_022683647.1
AGTCCCCAGGTGTCATGTCACTGGTGTTGCCACATGGCAAAAACActtactttaaatttaaaaccacATTGATAGCATTAGTTGACTTGATTTTTCTGAAGAAACATGAAGTAAAGCATGTTGTAAGTCCACagtctctttttatttatctgaaaCTTTCTCAATGTTAGTTTTTATCCATCttgtaaaatgcattaaaaaatgacACTGGGCACCCGCAATTATTCAAAAAATGCACATAAGAGGTACAAAATAATTCAgcctttttaaaagtttaattgaTATAAAAAGAGTGTGTTTCTGCAGAAtcattaaaatgacattttaccCATTTAATCTTTGCATTTGTGTGGTTAAGTTTAGCAGCCACTCTGCCTCACAAGGCCTTTAACAGGCCCCTCTCTCTTAGAtctgctctcaaacacacacacagcgtttCTTGGCAACAGGCTGGTTGTGTGAGACATGGAGGTGAGCAGAAGGgagagtGGAAGCCCTATGTGCAGGCCTACAAAAGACCTCCATATCAGTGAGCTTTATCTGGCAAAAAGGGGTCTCTCAGCTATTCCTGATTTGTCCAAATTCAAACAGCTCAGATATGTATGGCTTAACAACAACAAAataaaGAATTTAAATGGCAGTGTGTTTAACTGCTGTATAGCAGAGCTTTACCTACAGAATAATGAAATCACCACAATCTCAGGGGCCTTGAGGCACCTGACCTGTCTGCGAGTGCTGCTGCTTCACAATAACCAGCTGAAGAATCTGGAGGAGACAGTTGCTGAGCTGAGGCACACACACTGCCTGCAAACTGTCAATTTCTTCCTCAACCCCTTCACACAAGACCCTGAATACCGGGAATATGTGATCCATCACCTGCCATCTGTTCAAATACTGGACAGGAAAGAAGTGAGGCAGGAGGAGAGGAGACATGCTTTCAGACTCTTCTGTTCTGAGAGACTGAGAGTTCTGGACACACTTGCTTTTGGTAGACGTGCAGTTACGCCCCCTGTTGGACGGAAAATAACTCAGGATATGGTAAAATTGAGAGGAtaccttcagaggtcttgtggatTCCATGCCTCAACAGGTCAGAGCTGTTTAGgtcAGCATAGAACAATGTTTCCCTTAAATTGTCCGTCTGAGTACAAATCTGTCCTGCAATTCTCGATCATGGACTGGTGCAGTATGAGAACAACTCAGCAGAGCCCCCTGGAGGAGGAGGGTCCAACTGCACTCAACATCCTTACTGTCAAATTCAGATAACCCATGCACATAAGTGCTGccacaaacattaaaacacttcaGTGATACTATA
>XM_022683738.1
AAAGTTGTAGTCCCCAGGTGTCATGTCACTGGTGTTGCCACATGGCAAAAACActtactttaaatttaaaaccacATTGATAGCATTAGTTGACTTGATTTTTCTGAAGAAACATGAAGTAAAGCATGTTGTAAGTCCACagtctctttttatttatctgaaaCTTTCTCAATGTTAGTTTTTATCCATCttgtaaaatgcattaaaaaatgacACTGGGCACCCGCAATTATTCAAAAAATGCACATAAGAGGTACAAAATAATTCAgcctttttaaaagtttaattgaTATAAAAAGAGTGTGTTTCTGCAGAAtcattaaaatgacattttaccCATTTAATCTTTGCATTTGTGTGGTTAAGTTTAGCAGCCACTCTGCCTCACAAGGCCTTTAACAGGCCCCTCTCTCTTAGAtctgctctcaaacacacacacagcgtttCTTGGCAACAGGCTGGTTGTGTGAGACATGGAGGTGAGCAGAAGGgagagtGGAAGCCCTATGTGCAGGCCTACAAAAGACCTCCATATCAGTGAGCTTTATCTGGCAAAAAGGGGTCTCTCAGCTATTCCTGATTTGTCCAAATTCAAACAGCTCAGATATGTATGGCTTAACAACAACAAAataaaGAATTTAAATGGCAGTGTGTTTAACTGCTGTATAGCAGAGCTTTACCTACAGAATAATGAAATCACCACAATCTCAGGGGCCTTGAGGCACCTGACCTGTCTGCGAGTGCTGCTGCTTCACAATAACCAGCTGAAGAATCTGGAGGAGACAGTTGCTGAGCTGAGGCACACACACTGCCTGCAAACTGTCAATTTCTTCCTCAACCCCTTCACACAAGACCCTGAATACCGGGAATATGTGATCCATCACCTGCCATCTGTTCAAATACTGGACAGGAAAGAAGTGAGGCAGGAGGAGAGGAGACATGCTTTCAGACTCTTCTGTTCTGAGAGACTGAGAGTTCTGGACACACTTGCTTTTGGTAGACGTGCAGTTACGCCCCCTGTTGGACGGAAAATAACTCAGGATATGGTAAAATTGAGAGGAtaccttcagaggtcttgtggatTCCATGCCTCAACAGgtcAGCATAGAACAATGTTTCCCTTAAATTGTCCGTCTGAGTACAAATCTGTCCTGCAATTCTCGATCATGGACTGGTGCAGTATGAGAACAACTCAGCAGAGCCCCCTGGAGGAGGAGGGTCCAACTGCACTCAACATCCTTACTGTCAAATTCAGATAACCCATGCACATAAGTGCTGccacaaacattaaaacacttcaGTGATACTATA
>XM_022683783.1
CAGGTGTCATGTCACTGGTGTTGCCACATGGCAAAAACActtactttaaatttaaaaccacATTGATAGCATTAGTTGACTTGATTTTTCTGAAGAAACATGAAGTAAAGCATGTTGTAAGTCCACagtctctttttatttatctgaaaCTTTCTCAATGTTAGTTTTTATCCATCttgtaaaatgcattaaaaaatgacACTGGGCACCCGCAATTATTCAAAAAATGCACATAAGAGGTACAAAATAATTCAgcctttttaaaagtttaattgaTATAAAAAGAGTGTGTTTCTGCAGAAtcattaaaatgacattttaccCATTTAATCTTTGCATTTGTGTGGTTAAGTTTAGCAGCCACTCTGCCTCACAAGGCCTTTAACAGGCCCCTCTCTCTTAGAtctgctctcaaacacacacacagcgtttCTTGGCAACAGGCTGGTTGTGTGAGACATGGAGGTGAGCAGAAGGgagagtGGAAGCCCTATGTGCAGGCCTACAAAAGACCTCCATATCAGTGAGCTTTATCTGGCAAAAAGGGGTCTCTCAGCTATTCCTGATTTGTCCAAATTCAAACAGCTCAGATATGTATGGCTTAACAACAACAAAataaaGAATTTAAATGGCAGTGTGTTTAACTGCTGTATAGCAGAGCTTTACCTACAGAATAATGAAATCACCACAATCTCAGGGGCCTTGAGGCACCTGACCTGTCTGCGAGTGCTGCTGCTTCACAATAACCAGCTGAAGAATCTGGAGGAGACAGTTGCTGAGCTGAGGCACACACACTGCCTGCAAACTGTCAATTTCTTCCTCAACCCCTTCACACAAGACCCTGAATACCGGGAATATGTGATCCATCACCTGCCATCTGTTCAAATACTGGACAGGAAAGAAGTGAGGCAGGAGGAGAGGAGACATGCTTTCAGACTCTTCTGTTCTGAGAGACTGAGAGTTCTGGACACACTTGCTTTTGGTAGACGTGCAGTTACGCCCCCTGTTGGACGGAAAATAACTCAGGATATGGTAAAATTGAGAGgtcAGCATAGAACAATGTTTCCCTTAAATTGTCCGTCTGAGTACAAATCTGTCCTGCAATTCTCGATCATGGACTGGTGCAGTATGAGAACAACTCAGCAGAGCCCCCTGGAGGAGGAGGGTCCAACTGCACTCAACATCCTTACTGTCAAATTCAGATAACCCATGCACATAAGTGCTGccacaaacattaaaacacttcaGTGATACTATA

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015601043.2 False 1305 mRNA 0.42 10 11304590 11308663
XM_022683647.1 True 1318 mRNA 0.42 10 11304590 11308664
XM_022683738.1 False 1311 mRNA 0.42 10 11304590 11308672
XM_022683783.1 False 1258 mRNA 0.42 9 11304590 11308658

Neighbor

gene id symbol gene type direction distance location
foxn1 foxn1 coding downstream 169288 11120807 ~ 11135302 (-)
LOC103042223 cryba1a,LOC103042223,LOC108426912,LOC107743738,LOC108278232,LOC105898204 coding downstream 220707 11080848 ~ 11083883 (-)
LOC103043674 dhr13,LOC108427000,LOC107685074,LOC107589701,LOC107756995 coding downstream 228225 11072398 ~ 11076365 (-)
LOC111195508 NA coding downstream 547704 10753104 ~ 10756886 (-)
LOC111195496 tekt1 coding downstream 791802 10509040 ~ 10512788 (-)
arl4a arl4a,arl4aa coding upstream 400953 11709625 ~ 11713271 (-)
LOC103024995 NA coding upstream 405449 11714121 ~ 11726198 (-)
LOC103030898 LOC108426917,LOC107588234,LOC106582211,LOC107752288,LOC107683449 coding upstream 458883 11767555 ~ 11777303 (-)
tmem106b tmem106b coding upstream 468906 11777578 ~ 11787142 (-)
LOC103031554 zgc:63694,LOC108426967,LOC107752277,LOC107699226,LOC107555275,LOC108278095,LOC107728169,LOC107592659,LOC107699183 coding upstream 637798 11946470 ~ 11976692 (-)
G2897 NA non-coding downstream 142517 11161827 ~ 11162073 (-)
G2888 NA non-coding downstream 186627 11116380 ~ 11117963 (-)
G2881 unc119,LOC103043060 non-coding downstream 191784 11092170 ~ 11112806 (-)
G2865 NA non-coding downstream 233351 11071033 ~ 11071239 (-)
G2857 NA non-coding downstream 306510 10997852 ~ 10998080 (-)
G3010 NA non-coding upstream 115962 11424634 ~ 11425258 (-)
G3013 NA non-coding upstream 153988 11462660 ~ 11466549 (-)
G3055 NA non-coding upstream 422843 11731515 ~ 11754015 (-)
G3062 NA non-coding upstream 446623 11755295 ~ 11760809 (-)
G3066 NA non-coding upstream 453697 11762369 ~ 11762575 (-)
sarm1 sarm1,LOC107669752,LOC107743642,LOC107756984,LOC107685076 other downstream 10708 11281209 ~ 11293882 (-)
LOC103025442 lhx1a,LOC108427001,LOC108277614,LOC107743643,LOC105897175,LOC107669762,LOC107589700 other downstream 620125 10654858 ~ 10684465 (-)
G2783 NA other downstream 721843 10582289 ~ 10582747 (-)
rap1gap2 rap1gap2 other downstream 842730 10247465 ~ 10461860 (-)
hspa13 hspa13,LOC107682527,LOC107666191,LOC107714176 other downstream 1548835 9746622 ~ 9755755 (-)
LOC111192956 LOC108412924,LOC108444125,LOC108444119,LOC108416439 other upstream 615330 11924002 ~ 11940744 (-)
G3297 sacs,LOC107593479,LOC107740366,LOC107670382 other upstream 1431472 12740144 ~ 12758513 (-)
sgcg sgcg other upstream 1450394 12759066 ~ 12781165 (-)
LOC111197384 NA other upstream 1821540 13130212 ~ 13135641 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other upstream 2235828 13544500 ~ 13572372 (-)

Expression


Co-expression Network