LOC103042223 (cryba1a,LOC103042223,LOC108426912,LOC107743738,LOC108278232,LOC105898204)


Basic Information

Item Value
gene id LOC103042223
gene name cryba1a,LOC103042223,LOC108426912,LOC107743738,LOC108278232,LOC105898204
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11080848 ~ 11083883 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015602259.2
GGAGACCGTTGTGTGGAGCCCCCCTGAACGCACACAGCTATTTGTTGGGTAGGTCAGGTCAAGCAGCACTAAGAAAATTGCAAGAATGGCATTGACTAATCCCATGCCAATGGGACCATGGAAGATCACAGTATATGACCAGGAGAACTTCCAGGGCAAGCGCATGGAGTTCACCTCATCCTGCCAGAACATCATGGAGTGTGGAGTGGATAATATCCGCTCCCTGAAGGTGGAGTGTGGAGCCTGGGTTGGTTATGAGCACTCCAGCTACTGTGGGCAGCAGTTTATCCTGGAGAGAGGAGACTACCCTCGCTGGGAATCGTGGAGTGGCAGCAATGCTTACCATATCGAGAGGCTGATGTCCTTCCGCCCAGTCTGCTGTGCTAACCATAAGGAGTCTAAGATTACCGTGTTTGAGCGGGAGAATTTCATTGGGCGGCAGTGGGAAATGTGCGATGACTACCCCTCACTTCAGGCCATGGGCTGGCCCAACAACGAGCTTGGATCCATGCAGGTTCAAAGTGGGGCCTGGGTTTGCTACCAGTACCCTGGCTATCGTGGATACCAGTACATCCTGGAGTGTGACCGCCACGGCGGAGAGTACAAACACTACAGGGAGTGGGGCTCCCACGCTCAGACCTTCCAGGTGCAGTCTCTCCGCCGAGTGCAGCAGTAAGGaccgctcctcctcctcctcctcctccttcttctcctcctccctccctccctcctccacctccacctcctcatCCTCTTCCAGCTCCTCTCCTCCACCCATCCACTACAACTGTGGCCAGCCCAGTTAGACTCCTCATGGCACAGGCTGAAGATCTGGTGCTACACAGCAATTGTTTACAGCACTTTTCTCTCCTCGTTTCCCCCCACAACAAAAGAAaggagggagcgagagagccCCCAGCAGGCAGAGGCTGTGAACGGGGCAGTGATGTGACTCAGGCTTTGCTCCTTATCATTGTCACAGTGCGATTTGTGCAAAAAGCGATCAATAAAGGGTACCAACAAAAAATCGCTGTGCTGTGTGAGAGTGCGTGGAatgctttctttttgtttgaaaagctgttaaagaaaaaataaatatgaacaaatTGA
>XM_022683219.1
AAGAGGTCAGGAGACCGTTGTGTGGAGCCCCCCTGAACGCACACAGCTATTTGTTGGGTCAAGCAGCACTAAGAAAATTGCAAGAATGGCATTGACTAATCCCATGCCAATGGGACCATGGAAGATCACAGTATATGACCAGGAGAACTTCCAGGGCAAGCGCATGGAGTTCACCTCATCCTGCCAGAACATCATGGAGTGTGGAGTGGATAATATCCGCTCCCTGAAGGTGGAGTGTGGAGCCTGGGTTGGTTATGAGCACTCCAGCTACTGTGGGCAGCAGTTTATCCTGGAGAGAGGAGACTACCCTCGCTGGGAATCGTGGAGTGGCAGCAATGCTTACCATATCGAGAGGCTGATGTCCTTCCGCCCAGTCTGCTGTGCTAACCATAAGGAGTCTAAGATTACCGTGTTTGAGCGGGAGAATTTCATTGGGCGGCAGTGGGAAATGTGCGATGACTACCCCTCACTTCAGGCCATGGGCTGGCCCAACAACGAGCTTGGATCCATGCAGGTTCAAAGTGGGGCCTGGGTTTGCTACCAGTACCCTGGCTATCGTGGATACCAGTACATCCTGGAGTGTGACCGCCACGGCGGAGAGTACAAACACTACAGGGAGTGGGGCTCCCACGCTCAGACCTTCCAGGTGCAGTCTCTCCGCCGAGTGCAGCAGTAAGGaccgctcctcctcctcctcctcctccttcttctcctcctccctccctccctcctccacctccacctcctcatCCTCTTCCAGCTCCTCTCCTCCACCCATCCACTACAACTGTGGCCAGCCCAGTTAGACTCCTCATGGCACAGGCTGAAGATCTGGTGCTACACAGCAATTGTTTACAGCACTTTTCTCTCCTCGTTTCCCCCCACAACAAAAGAAaggagggagcgagagagccCCCAGCAGGCAGAGGCTGTGAACGGGGCAGTGATGTGACTCAGGCTTTGCTCCTTATCATTGTCACAGTGCGATTTGTGCAAAAAGCGATCAATAAAGGGTACCAACAAAAAATCGCTGTGCTGTGTGAGAGTGCGTGGAatgctttctttttgtttgaaaagctgttaaagaaaaaataaatatgaacaaatTGA

Function

symbol description
cryba1a Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens. Human ortholog(s) of this gene implicated in cataract and cataract 10 multiple types. Orthologous to human CRYBA1 (crystallin beta A1).

NR:

description
beta-crystallin A1

GO: NA

KEGG:

id description
K23482 CRYB; beta-crystallin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015602259.2 False 1110 mRNA 0.53 6 11080848 11083874
XM_022683219.1 True 1110 mRNA 0.53 6 11080848 11083883

Neighbor

gene id symbol gene type direction distance location
LOC103043674 dhr13,LOC108427000,LOC107685074,LOC107589701,LOC107756995 coding downstream 4483 11072398 ~ 11076365 (-)
LOC111195508 NA coding downstream 323962 10753104 ~ 10756886 (-)
LOC111195496 tekt1 coding downstream 568060 10509040 ~ 10512788 (-)
LOC103040855 NA coding downstream 1260939 9817662 ~ 9819909 (-)
LOC103040551 NA coding downstream 1266150 9812342 ~ 9814698 (-)
foxn1 foxn1 coding upstream 36924 11120807 ~ 11135302 (-)
lrrc72 NA coding upstream 220707 11304590 ~ 11308672 (-)
arl4a arl4a,arl4aa coding upstream 625742 11709625 ~ 11713271 (-)
LOC103024995 NA coding upstream 630238 11714121 ~ 11726198 (-)
LOC103030898 LOC108426917,LOC107588234,LOC106582211,LOC107752288,LOC107683449 coding upstream 683672 11767555 ~ 11777303 (-)
G2865 NA non-coding downstream 9609 11071033 ~ 11071239 (-)
G2857 NA non-coding downstream 82768 10997852 ~ 10998080 (-)
G2837 NA non-coding downstream 296708 10783804 ~ 10784140 (-)
G2835 NA non-coding downstream 297361 10783148 ~ 10783487 (-)
G2793 NA non-coding downstream 433724 10646918 ~ 10647124 (-)
G2881 unc119,LOC103043060 non-coding upstream 8287 11092170 ~ 11112806 (-)
G2888 NA non-coding upstream 32497 11116380 ~ 11117963 (-)
G2897 NA non-coding upstream 77944 11161827 ~ 11162073 (-)
G3010 NA non-coding upstream 340751 11424634 ~ 11425258 (-)
G3013 NA non-coding upstream 378777 11462660 ~ 11466549 (-)
LOC103025442 lhx1a,LOC108427001,LOC108277614,LOC107743643,LOC105897175,LOC107669762,LOC107589700 other downstream 396383 10654858 ~ 10684465 (-)
G2783 NA other downstream 498101 10582289 ~ 10582747 (-)
rap1gap2 rap1gap2 other downstream 618988 10247465 ~ 10461860 (-)
hspa13 hspa13,LOC107682527,LOC107666191,LOC107714176 other downstream 1325093 9746622 ~ 9755755 (-)
LOC103037880 LOC108432996 other downstream 1947277 9113479 ~ 9133571 (-)
sarm1 sarm1,LOC107669752,LOC107743642,LOC107756984,LOC107685076 other upstream 197326 11281209 ~ 11293882 (-)
LOC111192956 LOC108412924,LOC108444125,LOC108444119,LOC108416439 other upstream 840119 11924002 ~ 11940744 (-)
G3297 sacs,LOC107593479,LOC107740366,LOC107670382 other upstream 1656261 12740144 ~ 12758513 (-)
sgcg sgcg other upstream 1675183 12759066 ~ 12781165 (-)
LOC111197384 NA other upstream 2046329 13130212 ~ 13135641 (-)

Expression


Co-expression Network