LOC103038761


Basic Information

Item Value
gene id LOC103038761
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 1952738 ~ 1967670 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015604784.2
GCGCAAAACATGGCGGCTTCGCAATGGATGGAAGGATCGAGCGAGGAGGAATGAAATGATTTCGGTTCGGTGCTGTTGTTGTCTGTTTCTGCGGCTGAAAGATACATTCTGGAGGCATGTCTGCTTTGGATGAGAACACCAACATAGATGAACATGATGTCTCCATATCAGAAATCTCAGAGAATATGTTAAGCACCCAGACATTCTCTCTTGGTGGAAGTGTGTTAGAACCATCGATGCAGTGCTCACGTGAGAACATGACACCAAACGGTGACCAAGCAGATCTCCTCACGCACGTCCGTTTTATTGAGTCCATCTGCGCCGATGGGCCCGCCAAAGCTGCTTATGTCAATGGATCGGCTTCGCCCAATATTTCAGATGAAATTCTGTTAGATATCTCCAAAAATGTGCCAGGGTTCCTCCCCAAATCACTGGCCACACAAAATTCTACAGTCGCCACCAGCGTCCAGTTTGAAGAATGTGATCCACTTAGGAAGGACGGTGAAATGACCATTAGACAGATGTTAACTGCTGAAGATGTTGAAAATCGAGGCATATGGGGCTTTGATGAAGAAACTCCAGAGAACTCGCTTGACTGTTATGACGATGGTAATGACCTGAGCTGGAATCCACACAAAGAGTTTATGAAGTTCTTGCTGGAGGATCCTGATCGTACTGAACCTGAGGAGAAGGTGCCCACTATCCAGCCAGCTGTTAACAATAGGAGGAGAAAGCGTAAAATGGACATGGTGGTGATGGTAGATCCTTCAGAAGAGCCCTACATAGAGTTTGACTCTGAATCACAAAACGATCACTTGGGTGAAGGCAGCCAAACACCATACTCAAACGGAACTGCAGTGGCCTTGAAACACCTTTTTCCTAAACCAGCAAAAAACAGGAAGGGTCAGAAGGGGTTGGAGTTGGAGGACGAAACAGTGTTTTTCCCAAGCAATAGCAAATGGAATGCGAAATCGAATTCACAGAGGcactcaaaaaaacatttatatgctCCAGATCTGTCGCAATTCATATGCAAAGAGTGTGGAAGGTCATTTTTTGATCACAACTCGTTTTTAAAACACATAACTGTCCACAAAAAGAAGAGCCGGAAGGTCAAGGAAACCGTTGGACTTAAAGACGAGGGCAGAGATGCAAgtttacagtgtccacagtgcACTTTTGGAACCAACTGCCCCAACAAGTTTGTGCAGCATGCGAAAAGCCATGAGAAAGACAAGCGGTACTATCGATGTCAAAAGTGCCATTTTATGGCACTGAATGAACCTGAGCTAAAGGGTCATTTGCTTACGAAGCATCGAGTCACAGAAGCTCAGTATCTAGTAATGGACAAACAAGAAAGTTTACAGGAACAGAATGTCTGTGCATCAGATAGCAACGCAACAGCAATGTCTTTCACCTGTAAGCtgtgttattttaaaacaaaaaacaagaacatcATTAAAAATCATTTCGAGGTTTTTCACCGGAAGGACTTAAACGAAGATCTGACAGAAGGTGTACACTTCACGTGCAGTTCAGAAAAAAACGAGAAGATGGCACAGCCTTCCTCATTATGCAAGTTGCCCAGTGTAGGTTCACAGTCGCCAGAGAGGGAAACAAAACGATTACAGCCTGAAGACTGTAGGAAAAAACAGAGCGCTAAATCTAATCAAGTAACAGAAAGGCACAAAGCACGAAAACGAAAAGAGGTGGCAAATAAAAAAGTGGCCAAAAATGGATCTAGGGTTTACAAATCCATCAACACTCTTCTATCTCGAAAAAGACGTAACCAGCAGACAACCTCCAAAACTGACACTAACAAAAAAACTGACaataagagtcttacagctctAGAGAGTCTAGAGTCTGATAAATGCTGCAGTGATGAGGATTCCCTTGATCTCGAAACCACACAGTCTGGGAAAGAGGGTCTCAAATCATCTTCTAGGTTAAAGGGGGATCTTTTTGCCCTCAAGAAGAGGAGTTCAAATGGCACTTTGAAGTCTAGTGGAAGTGGTGGTACATGTGAAGAGGTTAGCAATAATGGCGACAGTCCCCAAGAACAGAAATCAAGAGGCAAGTTCAAACATTTGGCCAAGCCATCGTTGAAGAAATCTCCTTCCAAAAGGAAATTGTCCACTCCATTCCACAACATGCAAGGCCAAGATATCCTAATTGACTTTCCCAAATGTAAgcaaaaactgaagaaaaagatCAGCCCAGAAAAGAGCAAGTTTTTGAACGTTGAGGAGGATGATTTAGTTTATGATTCCAGCTTCCACCTTACAGAAAAAAGTGATGTCCAAGACGGTTTGTATATCAACAGCAAGTATTCACGCAAGCGTTCTTCTCCAGCGAAGGGAAGCCCACGTGCCTCTAGTGGATACTTTGTCGAAGACCTAAGCTCCCCGCAGAAATGTTCCATCAAAGAAGAATTCTTGGAAGAGACGTTGTGTGATGAAGCAGTGAATAATGAGGATGATATAGAATTTGACTTGGACCTGAAGTCCTGCCCGTACTGTCCTGCTGAATTCGAGTCAGGGATTAGTCTCTCCAACCACATTAGAGGGCATTTACACAGAGAGGGTTTGAGCAGTGGTGAACATCATGAAGCAGCAGTAGCCCAGATGGTATCCCCTAAAAAAGTGCCTCAGGTTCGGCGAAGACTGGCTGCAATGTCTCGAGTTAAAAAGGAGAACAGCCAGGCTGAGGCCGGGAAAACGTCAGAGGAacagacagagctcacctgtccACTATGTAGGGAATGGTTTATCTCAAGGATCGGACTGTCCAATCACGTTCGGGGACACCTGAAACGGCTAGGAAAGACGTCCTCGGCTGCGTACCGGTCACCTATCAAGGCACTGAAGGAACTGATGCGTGACAAGAAGCAGTTCAACATGAAGTTACAGGCTCTGGAAAAGAAATGCAGAGCCTCGAATAAATTATCTCCTTTTAGAGTCAGTAATGGCCTCATCTATTCTAACGCCAAAGTGCAGCGCTTTGCACATAGTGGCAAACAGCACAGACAGATCTCTTCTCCATCGGGAGATGAAAAGAAAAGGACAGAGATGAAAGATGTGATGAAAGGATCACCATCCAGTGATCTTATAGGAATTTTAAAGAAGAGGCGCGCTCATGAGGAGGCCAAAGTGAAGAGCTCATTCCAGACAGCGAGGAAggctcttcttctttctccaaTTAAAGAGCGAGGTCCAGCACTACATCAATGTAAAGCACTGCATAACTCAGTATCAGTTTCAGATAAAGGTGAACACAGCAGAAAGGTGTGCGCTCACTGTAATACATCATTCCACAGTGGAGTTAGCCTGTCCAATCACCTGCGAGCGTATACACGCAGAAAAAGAAACACGCTTACTGAAGGAACGACTCATGACTGTAAACAGAGGAAGCAGAGGTCAAGAAAGAAGAACTTTGGGTTCCACACTCCAGAAGAAATCTACAGACTCACCTGCAGGTTTTGTGATCTAGTCTTCCAGGGCCCGCTGTCCGTACAGGAGGACTGGGTGAAGCATTTACAGAGACATATAATGAACACTGCTGTACCACGCACAGGCGCGGGCATGGTGGAGGTTACCTGCTTCCCTAAAGAGCCCAGCTCGGACACAGAATCGCAGGCCAAGCCGTCCTCCTGAGCCCAGCACGCATAGCGGATTTCCCACTGTccataaaatgtaatgtaattgtaaatGATTTTACTTCCCCCGCCAGTTTGTATGATTTTGAATACCAAGGAATTTGAaattttcactttctctctcaacGCACAGCGACGTTCAGCCCTTAACACACAGCTGTctttttatattgttacattgtcCTGGTATTTTATATGACGCATAAATAATAGTGCTCATGgtgggtgatttttttttttttttttgtttgtttgtttgttttggttttattttttttattttccaaccGAGACCAACACCAAAAGACAACTGTTTACCTCAGACACTTCACACACCTTCTCAAGATGGGTTTTAGGATTTTATGGAACTGCGAATAGGCTCAACAAAACCTGAAATAatactgtattcattttattacagttgtttttaagcttttatttgtttttacttactTTTCAACCCAGTTAAACCTTTTattctcacactcactcagtgATTATGTATGGTGCAAATGTATAGGGAAAAAAAGTAGATATATTTactttatgaactttttttgtttcGTTACATACGATTTATGTTAAACAAACTGGTCTATCATTATTGAGAGACTTAAACTGATTTAATTAGTATGTGTGTCATGACTTCATTTCATTATTACACCTGACagggtttatttgtttttatcttgtttatttggGTCAGTTTTGGGTCATCCCGTCACCTCATTTTGATATCATACACAAAGGTCTGAAATGTAAAGTTCTGTTATTTGTGCTGGAAAAAAGAACCATTAACTGTTACTTATATTTGcagttatttttactgttatttttgttataaacatttttaaataatttatgtcAAAATGTAAATCTTGAAAGATTTTTGGTTGTGCAGAATAAAAacgttctgttgttttttttgga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015604784.2 True 4588 mRNA 0.42 6 1952738 1967670

Neighbor

gene id symbol gene type direction distance location
LOC103041746 LOC103041746,LOC108432452,LOC107602511 coding downstream 90011 1860413 ~ 1862727 (-)
ndc1 ndc1 coding downstream 94514 1835741 ~ 1858224 (-)
LOC103044599 glis1,LOC107602512,LOC106952155 coding downstream 119706 1796561 ~ 1833032 (-)
LOC103045337 NA coding downstream 160610 1783204 ~ 1792128 (-)
best4 best4,LOC106569841,LOC108262062 coding downstream 179847 1764264 ~ 1772891 (-)
LOC103039897 NA coding upstream 31430 1999100 ~ 2005172 (-)
LOC103039590 LOC103039590 coding upstream 42599 2010269 ~ 2011178 (-)
LOC103039280 stk25b,LOC108432500,LOC107585675,LOC107722570,LOC108278137,LOC107693719,LOC107589848 coding upstream 71216 2038886 ~ 2052143 (-)
thap4 thap4 coding upstream 100308 2067978 ~ 2073643 (-)
LOC103036651 LOC103036651,LOC108432502,LOC105899541,LOC105028795,LOC108278136,LOC107718120 coding upstream 135800 2103470 ~ 2112159 (-)
G608 NA non-coding downstream 58285 1877509 ~ 1894453 (-)
G589 rps8,rps8a,LOC107674081,LOC107688507,LOC107602544 non-coding downstream 189115 1757980 ~ 1763623 (-)
G504 NA non-coding downstream 196424 1754379 ~ 1756314 (-)
G502 hectd3,LOC107729394 non-coding downstream 198884 1751182 ~ 1753854 (-)
G496 hectd3 non-coding downstream 214821 1736394 ~ 1737917 (-)
G616 sept2 non-coding upstream 48886 2016556 ~ 2035389 (-)
G644 NA non-coding upstream 98905 2066575 ~ 2067409 (-)
LOC111192756 NA non-coding upstream 109405 2077075 ~ 2079605 (-)
G653 NA non-coding upstream 124753 2092423 ~ 2092992 (-)
G655 NA non-coding upstream 128550 2096220 ~ 2101575 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other downstream 24483 1920480 ~ 1928255 (-)
yipf1 yipf1 other downstream 79611 1864515 ~ 1873127 (-)
LOC111197534 NA other downstream 1096578 855579 ~ 856160 (-)
LOC103037308 LOC108440474,LOC108278112,LOC107585786,LOC107669856,LOC107745208 other downstream 1282023 589669 ~ 670715 (-)
znf414 NA other upstream 456043 2423713 ~ 2434401 (-)
G807 NA other upstream 582546 2550216 ~ 2600511 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other upstream 943084 2910754 ~ 2970340 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other upstream 1426534 3394204 ~ 3445386 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other upstream 1914700 3882370 ~ 3909671 (-)

Expression


Co-expression Network