LOC103039101 (tmem25)


Basic Information

Item Value
gene id LOC103039101
gene name tmem25
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 18047537 ~ 18060269 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669129.1
GGATCCTGCGCTCGGTAACGACATCATGCCTGTCTGCAGAAGCTCCTGAGCTGAAGCAGCTGCAGTGTATCCGCTCTCCTgcactggagtgtgtgtgtgtgtgagtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgttgtgtgagggCATCTGGTGCTGCAGGCATGCATGGATCTACAGCGGGATAAAAACACGTCCAGCGCCCGAACACACACAGGAAACTATGGAGTGTGTGTATCTGAGGCATGGGGCAGGACTCTCTATTCTACTCCTGCACACCTTTACCTGGGGATGGACAGGAGCAATCGATCCCGCCCCCAAGATTGACGGACACCAGCGTTCTGAGGTCACTCTGCAGGAAAATGTCTCCCACCGCTTCAACTGTGAGTCGGAGGGGTGGAGTTCACAGGCTCCGCCCCTTCTCACTTGGTACCTGAACGGACAGCGGCAGAGCGAGGTGACGGGCAGTCGAGGTACAGGGCGCCTGGTGATGAACTCACCTGAGGGTCCAGGACAGGTGAAGTTCAGCTCAGAGCGGAACAGCAGCTTCACTCTCCAGCCCAGGAAGTGGGACCGCGAGCTGGTGTGTGCCGCCACTAACCCGGCCGGCGGGGAGAGCTACAACGCTACCGTCACCCTTAACGTTCAGTTTCAGCCAGAGATTCTGCGAGTGAACGCTCACTACAGCGAAACAGCCGACCCTGGTCTCGCCCTGGTCCTCTTCGCTCTGGTTCGCTCCAACCCCCCTGCCACAATCACCTGGGTGGATCAGTCCGGCCAGCTGGTGGCCAACTCCACCGACTTTCTCATCCTGGACTCGAGGAGTTACCCCTGGCTGGCCAACCACAGTCTACAGGTCACTCTGAGCAGCCTGCCGCCCAACATCTCCGTCAGCGTCAACAACAGCATCGGCACCGTCCAGACCAACCTCACTCTAACAGAATTCCTGCAGTCCCGGGTGGAGGTGCCGATGCTGGGGATTGTTACGGGCGGTGTTGTCGGCTTCATCACCCTCCTCATCCTCACACTGATGGTGCTCTGCCTCCTGCAAAAGGACAAAGGCAAAGCCATCGAAGAGCCAGTGGCTATTCCTATAACCCCACAACGtaATAACTCAGCGAAGGAGCAGATGGATGGAATGTATCTGCCCCGGGAGAACATGTCCCTGCCCTCCAACATGCAGCTGAACGACCACAGCACTCTCTGCAAAGGACGGCCCAACTCCAAGCAGAGCACTTTACAGAGGAAGACTGATGAGGAAGACGAGGACCTGTCGTTGGCCTACGCAGCACGAGGTTTCGCCAGATATCCCATGGTCGGTTACATCTACAAAGTGAACAGCACAAGCAGTGACGAGATCTGGCTTTGACTCTacttctcaacacacacacacacacacacacacacacactctaccatTTCAGGTTCACGCATATTAAGGATGGCGTTTTTAACCATTAGCTATAAGaacatcctgttttttttaaagcagataGGGCTCATATATTCCAaagcataaatatttaaatatttaatatagtaacaaattaaaagcaaaaaacagaAGGTTTATTGTGTACAGCAGCCAAATGAGAGATTATTTGTTCCTCATAACTGATCTAATCAGCTGTGTTTCATCACGTTCTCCATAGTTGTACATTACATCTAATctcaaaaactaaaaattaaactacaacctcattacatttatttacatttatttattttttttattacacatgCCTTatt

Function

symbol description
tmem25 Predicted to be involved in negative regulation of excitatory postsynaptic potential and regulation of protein stability. Predicted to be located in late endosome and lysosome.

NR:

description
PREDICTED: transmembrane protein 25 isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K22652 TMEM25; transmembrane protein 25

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669129.1 True 1754 mRNA 0.51 9 18047537 18060269

Neighbor

gene id symbol gene type direction distance location
mpzl3 NA coding downstream 71655 17945074 ~ 17975882 (-)
LOC103041159 NA coding downstream 133409 17882776 ~ 17914128 (-)
zc3h4 zc3h4,LOC107683834,LOC107601737,LOC107690443,LOC107718283,LOC107585556 coding downstream 1361353 16674101 ~ 16686184 (-)
LOC103043199 NA coding downstream 1388857 16656235 ~ 16658680 (-)
LOC103044128 ckm,ckmb,LOC107690449,LOC107718278,LOC107601735 coding downstream 1424553 16619111 ~ 16622984 (-)
sik3 sik3 coding upstream 7610 18067879 ~ 18118621 (-)
LOC107196958 NA coding upstream 115505 18175774 ~ 18181003 (-)
cep164 cep164 coding upstream 127577 18187846 ~ 18202965 (-)
LOC103030909 LOC108443025 coding upstream 143776 18204045 ~ 18210644 (-)
samd4b samd4b coding upstream 174485 18234754 ~ 18248467 (-)
LOC111192372 NA non-coding downstream 6786 18034472 ~ 18040751 (-)
LOC111192371 NA non-coding downstream 13086 18030997 ~ 18034451 (-)
G4513 NA non-coding downstream 38353 18004091 ~ 18009184 (-)
G4499 NA non-coding downstream 196094 17847759 ~ 17851443 (-)
G4480 NA non-coding downstream 680300 17366847 ~ 17367237 (-)
G4619 NA non-coding upstream 2892 18063161 ~ 18066938 (-)
G4638 NA non-coding upstream 70572 18130841 ~ 18132384 (-)
G4644 NA non-coding upstream 96938 18157207 ~ 18158131 (-)
LOC111192376 NA non-coding upstream 110491 18170760 ~ 18173336 (-)
G4655 NA non-coding upstream 155862 18216131 ~ 18216727 (-)
G4621 NA other downstream 6771 18030362 ~ 18040766 (-)
LOC103040336 mpzl2 other downstream 48788 17983885 ~ 17998749 (-)
ercc2 ercc2,LOC107743694,LOC107601732 other downstream 1393569 16644492 ~ 16653968 (-)
LOC103022652 LOC103022652,LOC108425821,LOC108277503 other downstream 1764905 16278005 ~ 16282632 (-)
slc6a4 slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 other downstream 3575785 14380755 ~ 14471752 (-)
LOC103031959 NA other upstream 136311 18196580 ~ 18226004 (-)
LOC103038769 NA other upstream 1579096 19639365 ~ 19648822 (-)
LOC103038464 NA other upstream 1592517 19652786 ~ 19655913 (-)
LOC111192876 NA other upstream 2426325 20486594 ~ 20492524 (-)
G5095 eif4g1 other upstream 2569956 20630225 ~ 20637068 (-)

Expression


Co-expression Network