LOC107196958


Basic Information

Item Value
gene id LOC107196958
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 18175774 ~ 18181003 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669211.1
ggagagagagaagggggagaGAAGAAAGGAGAGGGAGGAGAATGGAAGGACCAGGGAGGAGCGAGAAAGACTGCAGACCAAAGTTTCTCTCCTGCAGGAAAGGTGTGATCGACTCAGCAGGAGAgtcagTGAGCTGGAGCAGAGAGAAAGTGTGGAGCATgtggagagaaagaaggaggtgGAGAAGaatggagagaaagaagagatgcTCAGAGTGGACGATCTAcagcctcctctctctccagccCCAGTGTCCCGGGACAGTCAAAGCAGCATCGATGATTTGCGAGAGTATATCTCGTGTGAGGGCGTGTCTCTGCAGAGGGCGCGGCGATTTCTGGAGAGTCAGACAggcagtctgagagagagacaggcagcaCTGAGGGCTGCCCACACCAGTCTGCAGGACCCCACACCAGGGGGCTTCACTAGCCAACTCTACGACAACCTAGAGCAGGAGGCGAGTCACCTGGAGGAGCTGAGGGAGACTGTGCAGAAAGGTCATACCCTTCTCAGGAAGAAGGAGGAAAGACTGAACCAGCTGGAAACCTCGCTGGTCGAGGAGCTGTCGTGTGACGATGGAGAGAGGTTGGCAGGAGACAGGAAAGTGACATTTGACGTTACAGACTCTGAGATCAGCAGTGCGTACGGCCACGAAGGAACAGctCCTACAGTTCCAGTGAAGGTGCAGCAGCTGGCCGATTCGCTGCAGCACATCTCCGGTCAGCTGAATACGGTTTTAGGGGCATTGGGATCCCTTACCCAGAGAACAGCGCCCCCTCTGGCTGCACACGCACCACTCCAGCCTCtctctcagcctctctctcagcctctctctcagcctctctctcaTCGATCCTCCTCACTTCCCCCCACCTCCATGTGGGCATGGCCCCCAAGCCCCGCCTCCTCCACCTCTATCACCAATCAGAACGGGTTTGCACACAGCAGTGGAGTAAATGGAGTGACACCTTCACGTGGATCTTCGGATCTTCTCTTCAACTCCCACTGGAGCAGATTCCTGCCTGGGTCTTCCATGGATACCAGTACAGCCATTCCCACGAGAACACACACACCGTATTATGGATACACTCCAAAAAGtcTCTCTTCCATTCAGTCTAAATCGTCAGAGATGGACAGCCAGACGTTGCAAGGACTGATTGAAGGAAACAAAAGATGGCTGGAAACACGACGCAAAGACCCCAGCATGCCTCTGTTCTCACGCTACAGGACTCCCTCCTCCACCAGTGGTTTGGTCCAACTCAGCCTGGATGAGAACAATCAGATAAAGGTGTACCATtactgaaaacaaa

Function

GO:

id name namespace
GO:0060030 dorsal convergence biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669211.1 True 1313 mRNA 0.54 9 18175774 18181003

Neighbor

gene id symbol gene type direction distance location
sik3 sik3 coding downstream 57153 18067879 ~ 18118621 (-)
LOC103039101 tmem25 coding downstream 115505 18047537 ~ 18060269 (-)
mpzl3 NA coding downstream 199892 17945074 ~ 17975882 (-)
LOC103041159 NA coding downstream 261646 17882776 ~ 17914128 (-)
zc3h4 zc3h4,LOC107683834,LOC107601737,LOC107690443,LOC107718283,LOC107585556 coding downstream 1489590 16674101 ~ 16686184 (-)
cep164 cep164 coding upstream 6843 18187846 ~ 18202965 (-)
LOC103030909 LOC108443025 coding upstream 23042 18204045 ~ 18210644 (-)
samd4b samd4b coding upstream 53751 18234754 ~ 18248467 (-)
paf1 paf1 coding upstream 76203 18257206 ~ 18266997 (-)
LOC103033864 crx,LOC108443020,LOC107395012,LOC106612616,LOC107094494 coding upstream 118570 18299573 ~ 18306160 (-)
LOC111192376 NA non-coding downstream 2438 18170760 ~ 18173336 (-)
G4644 NA non-coding downstream 17643 18157207 ~ 18158131 (-)
G4638 NA non-coding downstream 43390 18130841 ~ 18132384 (-)
G4619 NA non-coding downstream 108836 18063161 ~ 18066938 (-)
LOC111192372 NA non-coding downstream 135023 18034472 ~ 18040751 (-)
G4655 NA non-coding upstream 35128 18216131 ~ 18216727 (-)
G4630 NA non-coding upstream 74102 18255105 ~ 18256327 (-)
LOC103033003 NA non-coding upstream 87012 18268015 ~ 18273460 (-)
G4678 NA non-coding upstream 204680 18385683 ~ 18387375 (-)
G4671 NA non-coding upstream 208269 18389272 ~ 18504882 (-)
G4621 NA other downstream 135008 18030362 ~ 18040766 (-)
LOC103040336 mpzl2 other downstream 177025 17983885 ~ 17998749 (-)
ercc2 ercc2,LOC107743694,LOC107601732 other downstream 1521806 16644492 ~ 16653968 (-)
LOC103022652 LOC103022652,LOC108425821,LOC108277503 other downstream 1893142 16278005 ~ 16282632 (-)
slc6a4 slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 other downstream 3704022 14380755 ~ 14471752 (-)
LOC103031959 NA other upstream 15577 18196580 ~ 18226004 (-)
LOC103038769 NA other upstream 1458362 19639365 ~ 19648822 (-)
LOC103038464 NA other upstream 1471783 19652786 ~ 19655913 (-)
LOC111192876 NA other upstream 2305591 20486594 ~ 20492524 (-)
G5095 eif4g1 other upstream 2449222 20630225 ~ 20637068 (-)

Expression


Co-expression Network