LOC103031705


Basic Information

Item Value
gene id LOC103031705
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 20954003 ~ 20968088 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669535.1
TATCCAGCCCCTTTACAAGAGGTCTTCGGTTGTCATGGCAACCTCAAGCTTTGAGTGGCTCGTAAGAGCTTCCTCTGACGTTGTCTTTTCTGTCACTCCTTTTCTCCTCCGATTCGGTTCTACCTCTGTTCCATCCGTCTCTTCTCTCTTCACACTGATGGATCTACTGAatggacagcaggacagcagtgGACAGGAGGACGCTGTGGACGAGCGGATCTGAGCGAAGGCCTCCCTGTGAGCGTCTGTGTATGGGCAGGAATTAACCAATGAGAGGAAGACGTCTCCGCCCCATATCAGCAAAAGAAGCACACCAATCAGAAGAGGAAACAGAAGTGCGAGAAGAAGAAGATGGCATCAATTCGTCCTTGTGTCCCTTGTGTGGGCGTGGCTTTGACATGCCACTCCTTCTGCCCTGCTCTCACACACTATGTGGGCGGTGCCTAACAGAAGGGGCGCGGTTAGACAAAACACGTAGGCCTGTGGCAAGAGGCATGTCCTATGCCTCCTACAGACCGATCTGTGTTGTTCTGTGTCCACGTTGTTGTCATGGCGTTGAGTTGCCATGCTTCGATTGGTCGTCTGCGACTCAGTGCCTGCCTATTGACCCTACAGTGACTGTTGACCCTGAGTGTGGTGCACTGACGTGTCAGGGTACGAGAGGACGAGAGGGAAGTGAAAGCGACGGTAGAGTTACGATGAAGGTGCCGGGAATATCAGATGGCAGTGTGGATCTTTCTGAGGAGGAGATGAAAAGCTCTGTATCAGGTCTAATCTTTGCCCTGGACTCCTCCTCCGCTGCTCCGCCCCTTCACCTCTCAAACTCCGCCCTCACCGCCACCTTCACAGGTAACTCCAGTCCATGGGGTGACTCTGgtgatcagtgcaggtgtcAGGACCCCTGTGCCCCTCTTCCTCAGGTGTGTGGAAACGTGGCCGTTCACAGAGGCCAGTACTACTGGGAGGTTGATGTGTGTAACAGCGCCCTCTACAGGATCGGTGTAACCTCATTGGCTGGTGACCTGGCATGGTGGTTCGAGAGGTGTGGCCCTGCGTTCCACACTGTTTTTGATGGATGCCACGAGCTCCTCCCCTCCGTCCCCCCACAGCTGAAGACGGTGGGTGTGTTCTTAAACGTGGGCGGGTCGTCCCTCACCTTCCACAACCCTTTAACTCAAGAACTTCTCGCCGCCATACCCGCCCGCTTTACCCCGCCCCTTTCCCCTGCCATTCAGCTGGGCCACGGCAAGCTTAAGCTCCGCCCAGGCCTGCCACCTCCAAGCCATGTCTTCTCGAGCTGTGGCTCGGCCTATAGAGGTCCAGGAGGGGCGGGGCGGGGTCGATGGAGGCAGGACGTCACCTTCAGCTCCGTGAGGACCGTGATTCACAAGTTTGAGGAGATGGCGGCATCCGAAAGTGACTCAGGACTGATGTCGAGTTTTAGCTCCAGCTCCACCCTGGCCTCCCTACCTGAGCCCAGCTGTGGCCTGGAGAGAGCGCACCCTTCTGGGCAAGAACCATAGACAGCGCTGAGGTTATCCTTATTAAATAGCttataaaatagctaaatgtggAACTGTGAATCAACAATGTTATTCTTAATGGGAAAATTGGGACAATTCTGTAATTCTAAGGGAGAATCACACTTTTTCAGCAGTTTCTGGTAATTCTTCAGAATGTTGAGAAACTCTCagaattagtatttatttaaaaccgCTTGATCAAAGAGAGTGTtagctgctttaaaaaagagcttcatttttcatggagttttatttgttgtgacatattttgttttatcaGTAGCTTCATATGTCCAAAATTgcaattttacagaaaataggaaaaacatcttaactttcaataaaagtcaatggaaaatatttaattctaagttattttggagcattcctattggtccattcatcgtGATTTTTTcccacaatgtaaagaacaactgccaagttcaaatattttcataaagtgtaaaatgagaaaaatttaAGTTAAGATGTTTGATTGACCATGTTGGGGTGGCATCTGTCATTGTTAAGAACCAAGATGATCACCTTCAACATGATTTTTGTCTTAAACTTACTTCAGCTTCTGCTTTAACACCTCCACTCTACACTCTGTAAACCTGGATATGTTGaatgtactttaaaaaatgaggtAATTCATTgcatcaaatgttttaagtattgTTTTATTGAAACCCTTCAGTTATTATGCCTcaattaaaagttaatttaactgAGGTTTTTTGTTACATCA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006813 potassium ion transport biological_process

KEGG:

id description
ko04072 Phospholipase D signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669535.1 True 2274 mRNA 0.48 5 20954003 20968088

Neighbor

gene id symbol gene type direction distance location
chrd chrd,LOC107681909,LOC107709376 coding downstream 18792 20922345 ~ 20935211 (-)
LOC103042786 LOC108411335 coding downstream 62211 20767269 ~ 20891792 (-)
clcn2 NA coding downstream 292239 20638406 ~ 20661764 (-)
LOC103044023 NA coding downstream 435528 20492572 ~ 20518475 (-)
LOC103039500 lrfn1,LOC108440319,LOC108277437,LOC107733400 coding downstream 798282 19874081 ~ 20155721 (-)
pde2a pde2a coding upstream 314208 21282296 ~ 21615652 (-)
arap1 arap1 coding upstream 686935 21655023 ~ 21766590 (-)
stard10 stard10,LOC108278271,LOC106581404 coding upstream 808143 21776231 ~ 21817947 (-)
parl parl,LOC107670111,LOC107689587 coding upstream 1068400 22036488 ~ 22046978 (-)
LOC111192513 NA coding upstream 1160846 22128934 ~ 22130477 (-)
G5112 NA non-coding downstream 58517 20702734 ~ 20895486 (-)
G5141 NA non-coding downstream 88760 20864752 ~ 20865243 (-)
G5114 NA non-coding downstream 132880 20757175 ~ 20821123 (-)
G5104 NA non-coding downstream 225903 20677325 ~ 20728100 (-)
G5100 eif4g1 non-coding downstream 330888 20621649 ~ 20623115 (-)
G5171 NA non-coding upstream 14157 20982245 ~ 20983581 (-)
G5192 LOC108413394 non-coding upstream 113076 21081164 ~ 21084939 (-)
G5191 NA non-coding upstream 119861 21087949 ~ 21167913 (-)
G5193 NA non-coding upstream 121861 21089949 ~ 21115163 (-)
LOC107197591 NA non-coding upstream 299702 21267790 ~ 21272119 (-)
G5095 eif4g1 other downstream 316935 20630225 ~ 20637068 (-)
LOC111192876 NA other downstream 461479 20486594 ~ 20492524 (-)
LOC103038464 NA other downstream 1298090 19652786 ~ 19655913 (-)
LOC103038769 NA other downstream 1305181 19639365 ~ 19648822 (-)
LOC103031959 NA other downstream 2727999 18196580 ~ 18226004 (-)
inppl1 inppl1,inppl1a,LOC108261207 other upstream 948278 21916366 ~ 21940806 (-)
LOC111192507 NA other upstream 978698 21946786 ~ 21961465 (-)
G5396 NA other upstream 1163146 22131234 ~ 22200308 (-)
G5407 NA other upstream 1187697 22155785 ~ 22158185 (-)
G5565 NA other upstream 1639681 22607769 ~ 22628182 (-)

Expression


Co-expression Network