LOC103044599 (glis1,LOC107602512,LOC106952155)


Basic Information

Item Value
gene id LOC103044599
gene name glis1,LOC107602512,LOC106952155
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 1796561 ~ 1833032 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669852.1
CCTGCGCGCGCGTGGGAGGGTGAAGCATCGCGGGACTGGAGCGGAGCAGCGGGTTTTTGGGGACAAAAGAAAGATTCTTTACATCCGGAAAACATGGAGTGATTTATCCTCATCACAAGAATTCAAACAAGACCATCCATCCCACATCTTTCACCCCAGAGCACTATTAGCAACGAGATGGGGCCGACCAGACTTGGACCTGCAGCTTTACAGCTGGAAAAGTGCAGCTTTTCTAGCAACGTTTTAGACCAAGAGCAGCTTCCCCAGTATCCCCTGAACTCCTGCAGCCAGCACTGCGTCTCCCATTCACTTCCCATCCAGAGCGTTAACATGAGAACTTGTGAATCCAAGACTGTAGTGCCCATCGTTTCCAATGACGCCATTGATTTAGCCTCTATCGTCCAATTGACTCAGAGATCAGTAATGTACCAGTGCATCAGTGAAGTTCAAGCTGACTTAGACTGCAGCCTTCCAGGCCGAGGTGAGCTTTCTGAAGTCACCAGCACTTCCACTCCTTCACCTGCATCCTTCACTCCTTCCTACTCCTCCAGTCCGTGCTGTGATGGATCCAGTCCACAGCTGTTGGGTTCTCATTGTTCTCAATCAATCTCTACGTCTACAATTCTCAAGAACTTCAAGAAAGAACCTGGAAgtacgtttgaagtttgcagtTGCCCTAAGAACAAGGATGTACTTTATCATGTCAGACCTGAACACAGCTGTTCCAACACCTGTGCAGACTCAGCTAATGAACTGGCCAATCAGCTTCAAGCTCAAAAAAGAACAGATTTAGGACTTGCACCCGAAGAGAAGGAGGTGAAATTATTCTCTTGTACTGAGCAGCCATGCCAGTGGATGGACTGCCGGGCGTCTTACGTGCAAAAAGATGAGCTGGTGAGGCACATTGAGAAAGTTCACGTGGACCAGCGGAAAGGAGATGATTTCACTTGTTTTTGGGCCGGCTGTGTTCGCCGCTGCAAGCCCTTCAACGCCCGCTACAAACTGCTCATCCACATGAGGGTCCACTCTGGAGAGAAGCCCAACCGGTGCATGtttgaAGGCTGCAGTAAGGCTTTTTCTCGATTGGAGAACCTGAAGATCCACCTGCGGAGTCACACGGGTGAAAAGCCGTATATTTGTCAGTTTCGCGGCTGCATGAAGGCCTTCAGCAACTCCAGCGACCGAGCCAAACACCAGAGAACACACCTGGAcacgAAGCCGTACGCCTGCCAGCTCCCGGGCTGCACCAAGCGCTACACTGATCCCAGCTCCTTACGCAAGCATGTGAAGAGCCACTCCAGCAGAACCCTGACCACACTCCACCAGCAGCAATCTTGTTTGGAGGCGGACTCGGAGTGCCTGGAGGAACGACTGATGGAGCACAGTTCTCTCTACCAGCATCAACAAAGCAGCTTTAATGCAGGGCTGTCGGAGAACAGTGTGACTGTGTGTAGCAGGAGTCCAGCAGTGTCCCGCAGCACGGAGCTCAGCTACACCCGACACCACCCTCATCCTATACACAGcaaccacaacaacaacaacatcagCCTCACACAGGACAGGCTGACCTGTCCACTCTTGTCCGGAGGTCcgatcagccaatcagaagctcCACAATCAGTCAAAGAAACATCCTTCATCAGCTCAGCTCAGAAACCCAGCCTGCTCCACCCCGATCACCAAACCCACCAACACTCGTTCCACAGTTTTCCCGCCCTGCCGGATCAGAACTACACGGATAGAGGGAATGCTCCACACGGCTGCGAGCAGGAAGGATACATGTACATCCCCACGTTTACCACACCTGATTTTAGCTCATGTCAGGACCCTCAGGCTGTCAGTGGGAATTTCTCCAGTGGTCCAGATGATGGTTTTCTGCTGCAGATGGGTGTGTATGACCGGTTCCTGGGTCAGATCTGTTCTCTGTACGCTGAGACATGAACCCCAACTTCTTGTGTCACTCACCAGACACTCATCTCTACAAGTCTGGACAGTGGTGGACTGGGACACACTCTAATTCAGTTTATAGCACACATTTTTTCTACTGGAGGGGTAGAAGGACATCCATAGATGAGCAATTTTTTTCAGACACATTATCAAATTTCCTTGATCTAGAGGGACATATTCATAATTTATTGTAAGAAGGGACACTCTAGCGAGcactttataatttttttctccaCAAGAAGTGCAGTGCTTTTCTTCCAGAGGGGCAATTGCCCCCCCTAGCCCCCCTTGAATCTGCTTGTGAGTCTGGACAAACTGGACCTGGGTTAATAACCCACACACTGAGGTACTGATGGAACTGACTGATCAAAAAAGGTTCTGGACTTTTTGATTTTAGCACCAGATTTTTTCATGTAGCATCGTTCTCCCACCACAGTTTTTCAGACCATAGTGCTGAAGATCATGTTTACACTAAAGAGGAGATGTGAGGTAACTGCAGTGTGTTCTCTTCTTTTAAACAATTTGTACAGATCTGGTTActtcattttctaaaataaaagtcctttaAGCTGAT
>XM_022669880.1
CCTGCGCGCGCGTGGGAGGGTGAAGCATCGCGGGACTGGAGCGGAGCAGCGGGTTTTTGGGGACAAAAGAAAGATTCTTTACATCCGGAAAACATGGAGTGATTTATCCTCATCACAAGAATTCAAACAAGACCATCCATCCCACATCTTTCACCCCAGAGCACTATTAGCAACGAGATGGGGCCGACCAGACTTGGACCTGCAGCTTTACAGCTGGAAAAGTGCAGCTTTTCTAGCAACGTTTTAGACCAAGAGCAGCTTCCCCAGTATCCCCTGAACTCCTGCAGCCAGCACTGCGTCTCCCATTCACTTCCCATCCAGAGCGTTAACATGAGAACTTGTGAATCCAAGACTGTAGTGCCCATCGTTTCCAATGACGCCATTGATTTAGCCTCTATCGTCCAATTGACTCAGAGATCAGTAATGTACCAGTGCATCAGTGAAGTTCAAGCTGACTTAGACTGCAGCCTTCCAGGCCGAGGTGAGCTTTCTGAAGTCACCAGCACTTCCACTCCTTCACCTGCATCCTTCACTCCTTCCTACTCCTCCAGTCCGTGCTGTGATGGATCCAGTCCACAGCTGTTGGGTTCTCATTGTTCTCAATCAATCTCTACGTCTACAATTCTCAAGAACTTCAAGAAAGAACCTGGAAgtacgtttgaagtttgcagtTGCCCTAAGAACAAGGATGTACTTTATCATGTCAGACCTGAACACAGCTGTTCCAACACCTGTGCAGACTCAGCTAATGAACTGGCCAATCAGCTTCAAGCTCAAAAAAGAACAGATTTAGGACTTGCACCCGAAGAGAAGGAGGTGAAATTATTCTCTTGTACTGAGCAGCCATGCCAGTGGATGGACTGCCGGGCGTCTTACGTGCAAAAAGATGAGCTGGTGAGGCACATTGAGAAAGTTCACGTGGACCAGCGGAAAGGAGATGATTTCACTTGTTTTTGGGCCGGCTGTGTTCGCCGCTGCAAGCCCTTCAACGCCCGCTACAAACTGCTCATCCACATGAGGGTCCACTCTGGAGAGAAGCCCAACCGGTGCATGtttgaAGGCTGCAGTAAGGCTTTTTCTCGATTGGAGAACCTGAAGATCCACCTGCGGAGTCACACGGGTGAAAAGCCGTATATTTGTCAGTTTCGCGGCTGCATGAAGGCCTTCAGCAACTCCAGCGACCGAGCCAAACACCAGAGAACACACCTGGAcacgAAGCCGTACGCCTGCCAGCTCCCGGGCTGCACCAAGCGCTACACTGATCCCAGCTCCTTACGCAAGCATGTGAAGAGCCACTCCAGCAGAACCCTGACCACACTCCACCAGCAGCAATCTTGTTTGGAGGCGGACTCGGAGTGCCTGGAGGAACGACTGATGGAGCACAGTTCTCTCTACCAGCATCAACAAAGCAGCTTTAATGGGCTGTCGGAGAACAGTGTGACTGTGTGTAGCAGGAGTCCAGCAGTGTCCCGCAGCACGGAGCTCAGCTACACCCGACACCACCCTCATCCTATACACAGcaaccacaacaacaacaacatcagCCTCACACAGGACAGGCTGACCTGTCCACTCTTGTCCGGAGGTCcgatcagccaatcagaagctcCACAATCAGTCAAAGAAACATCCTTCATCAGCTCAGCTCAGAAACCCAGCCTGCTCCACCCCGATCACCAAACCCACCAACACTCGTTCCACAGTTTTCCCGCCCTGCCGGATCAGAACTACACGGATAGAGGGAATGCTCCACACGGCTGCGAGCAGGAAGGATACATGTACATCCCCACGTTTACCACACCTGATTTTAGCTCATGTCAGGACCCTCAGGCTGTCAGTGGGAATTTCTCCAGTGGTCCAGATGATGGTTTTCTGCTGCAGATGGGTGTGTATGACCGGTTCCTGGGTCAGATCTGTTCTCTGTACGCTGAGACATGAACCCCAACTTCTTGTGTCACTCACCAGACACTCATCTCTACAAGTCTGGACAGTGGTGGACTGGGACACACTCTAATTCAGTTTATAGCACACATTTTTTCTACTGGAGGGGTAGAAGGACATCCATAGATGAGCAATTTTTTTCAGACACATTATCAAATTTCCTTGATCTAGAGGGACATATTCATAATTTATTGTAAGAAGGGACACTCTAGCGAGcactttataatttttttctccaCAAGAAGTGCAGTGCTTTTCTTCCAGAGGGGCAATTGCCCCCCCTAGCCCCCCTTGAATCTGCTTGTGAGTCTGGACAAACTGGACCTGGGTTAATAACCCACACACTGAGGTACTGATGGAACTGACTGATCAAAAAAGGTTCTGGACTTTTTGATTTTAGCACCAGATTTTTTCATGTAGCATCGTTCTCCCACCACAGTTTTTCAGACCATAGTGCTGAAGATCATGTTTACACTAAAGAGGAGATGTGAGGTAACTGCAGTGTGTTCTCTTCTTTTAAACAATTTGTACAGATCTGGTTActtcattttctaaaataaaagtcctttaAGCTGAT
>XM_022669916.1
CCTGCGCGCGCGTGGGAGGGTGAAGCATCGCGGGACTGGAGCGGAGCAGCGGGTTTTTGGGGACAAAAGAAAGATTCTTTACATCCGGAAAACATGGAGTGATTTATCCTCATCACAAGAATTCAAACAAGACCATCCATCCCACATCTTTCACCCCAGAGCACTATTAGCAACGAGATGGGGCCGACCAGACTTGGACCTGCAGCTTTACAGCTGGAAAAGTGCAGCTTTTCTAGCAACGTTTTAGACCAAGAGCAGCTTCCCCAGTATCCCCTGAACTCCTGCAGCCAGCACTGCGTCTCCCATTCACTTCCCATCCAGAGCGTTAACATGAGAACTTGTGAATCCAAGACTGTAGTGCCCATCGTTTCCAATGACGCCATTGATTTAGCCTCTATCGTCCAATTGACTCAGAGATCAGTAATGTACCAGTGCATCAGTGAAGTTCAAGCTGACTTAGACTGCAGCCTTCCAGGCCGAGGTGAGCTTTCTGAAGTCACCAGCACTTCCACTCCTTCACCTGCATCCTTCACTCCTTCCTACTCCTCCAGTCCGTGCTGTGATGGATCCAGTCCACAGCTGTTGGGTTCTCATTGTTCTCAATCAATCTCTACGTCTACAATTCTCAAGAACTTCAAGAAAGAACCTGGAAgtacgtttgaagtttgcagtTGCCCTAAGAACAAGGATGTACTTTATCATGTCAGACCTGAACACAGCTGTTCCAACACCTGTGCAGACTCAGCTAATGAACTGGCCAATCAGCTTCAAGCTCAAAAAAGAACAGATTTAGGACTTGCACCCGAAGAGAAGGAGGTGAAATTATTCTCTTGTACTGAGCAGCCATGCCAGTGGATGGACTGCCGGGCGTCTTACGTGCAAAAAGATGAGCTGGTGAGGCACATTGAGAAAGTTCACGTGGACCAGCGGAAAGGAGATGATTTCACTTGTTTTTGGGCCGGCTGTGTTCGCCGCTGCAAGCCCTTCAACGCCCGCTACAAACTGCTCATCCACATGAGGGTCCACTCTGGAGAGAAGCCCAACCGGTGCATGtttgaAGGCTGCAGTAAGGCTTTTTCTCGATTGGAGAACCTGAAGATCCACCTGCGGAGTCACACGGGTGAAAAGCCGTATATTTGTCAGTTTCGCGGCTGCATGAAGGCCTTCAGCAACTCCAGCGACCGAGCCAAACACCAGAGAACACACCTGGAcacgAAGCCGTACGCCTGCCAGCTCCCGGGCTGCACCAAGCGCTACACTGATCCCAGCTCCTTACGCAAGCATGTGAAGAGCCACTCCAGCAGAACCCTGACCACACTCCACCAGCAATCTTGTTTGGAGGCGGACTCGGAGTGCCTGGAGGAACGACTGATGGAGCACAGTTCTCTCTACCAGCATCAACAAAGCAGCTTTAATGCAGGGCTGTCGGAGAACAGTGTGACTGTGTGTAGCAGGAGTCCAGCAGTGTCCCGCAGCACGGAGCTCAGCTACACCCGACACCACCCTCATCCTATACACAGcaaccacaacaacaacaacatcagCCTCACACAGGACAGGCTGACCTGTCCACTCTTGTCCGGAGGTCcgatcagccaatcagaagctcCACAATCAGTCAAAGAAACATCCTTCATCAGCTCAGCTCAGAAACCCAGCCTGCTCCACCCCGATCACCAAACCCACCAACACTCGTTCCACAGTTTTCCCGCCCTGCCGGATCAGAACTACACGGATAGAGGGAATGCTCCACACGGCTGCGAGCAGGAAGGATACATGTACATCCCCACGTTTACCACACCTGATTTTAGCTCATGTCAGGACCCTCAGGCTGTCAGTGGGAATTTCTCCAGTGGTCCAGATGATGGTTTTCTGCTGCAGATGGGTGTGTATGACCGGTTCCTGGGTCAGATCTGTTCTCTGTACGCTGAGACATGAACCCCAACTTCTTGTGTCACTCACCAGACACTCATCTCTACAAGTCTGGACAGTGGTGGACTGGGACACACTCTAATTCAGTTTATAGCACACATTTTTTCTACTGGAGGGGTAGAAGGACATCCATAGATGAGCAATTTTTTTCAGACACATTATCAAATTTCCTTGATCTAGAGGGACATATTCATAATTTATTGTAAGAAGGGACACTCTAGCGAGcactttataatttttttctccaCAAGAAGTGCAGTGCTTTTCTTCCAGAGGGGCAATTGCCCCCCCTAGCCCCCCTTGAATCTGCTTGTGAGTCTGGACAAACTGGACCTGGGTTAATAACCCACACACTGAGGTACTGATGGAACTGACTGATCAAAAAAGGTTCTGGACTTTTTGATTTTAGCACCAGATTTTTTCATGTAGCATCGTTCTCCCACCACAGTTTTTCAGACCATAGTGCTGAAGATCATGTTTACACTAAAGAGGAGATGTGAGGTAACTGCAGTGTGTTCTCTTCTTTTAAACAATTTGTACAGATCTGGTTActtcattttctaaaataaaagtcctttaAGCTGAT

Function

symbol description
glis1 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within positive regulation of transcription, DNA-templated. Predicted to be active in nucleus.

NR:

description
PREDICTED: zinc finger protein GLIS1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669852.1 True 2521 mRNA 0.49 9 1796561 1833032
XM_022669880.1 False 2518 mRNA 0.49 9 1796561 1833032
XM_022669916.1 False 2518 mRNA 0.49 9 1796561 1833032

Neighbor

gene id symbol gene type direction distance location
LOC103045337 NA coding downstream 4433 1783204 ~ 1792128 (-)
best4 best4,LOC106569841,LOC108262062 coding downstream 23670 1764264 ~ 1772891 (-)
acadm acadm,LOC107674066,LOC107602542,LOC107688505,LOC107584839 coding downstream 67175 1719812 ~ 1729386 (-)
rabggtb rabggtb,LOC107732517,LOC107584851,LOC107576861 coding downstream 78907 1707739 ~ 1717654 (-)
LOC111192362 NA coding downstream 300134 1493166 ~ 1496427 (-)
ndc1 ndc1 coding upstream 2709 1835741 ~ 1858224 (-)
LOC103041746 LOC103041746,LOC108432452,LOC107602511 coding upstream 27381 1860413 ~ 1862727 (-)
LOC103038761 NA coding upstream 119706 1952738 ~ 1967670 (-)
LOC103039897 NA coding upstream 166068 1999100 ~ 2005172 (-)
LOC103039590 LOC103039590 coding upstream 177237 2010269 ~ 2011178 (-)
G589 rps8,rps8a,LOC107674081,LOC107688507,LOC107602544 non-coding downstream 32938 1757980 ~ 1763623 (-)
G504 NA non-coding downstream 40247 1754379 ~ 1756314 (-)
G502 hectd3,LOC107729394 non-coding downstream 42707 1751182 ~ 1753854 (-)
G496 hectd3 non-coding downstream 58644 1736394 ~ 1737917 (-)
G476 ptbp1a,LOC107729315,LOC107584874,LOC108432475,LOC107602545,LOC107674042,LOC107688524,LOC107732511 non-coding downstream 273816 1511045 ~ 1522745 (-)
G608 NA non-coding upstream 44477 1877509 ~ 1894453 (-)
G616 sept2 non-coding upstream 183524 2016556 ~ 2035389 (-)
G644 NA non-coding upstream 233543 2066575 ~ 2067409 (-)
LOC111192756 NA non-coding upstream 244043 2077075 ~ 2079605 (-)
G653 NA non-coding upstream 259391 2092423 ~ 2092992 (-)
LOC111197534 NA other downstream 940401 855579 ~ 856160 (-)
LOC103037308 LOC108440474,LOC108278112,LOC107585786,LOC107669856,LOC107745208 other downstream 1125846 589669 ~ 670715 (-)
yipf1 yipf1 other upstream 31483 1864515 ~ 1873127 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other upstream 87448 1920480 ~ 1928255 (-)
znf414 NA other upstream 590681 2423713 ~ 2434401 (-)
G807 NA other upstream 717184 2550216 ~ 2600511 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other upstream 1077722 2910754 ~ 2970340 (-)

Expression


Co-expression Network