ndc1 (ndc1)


Basic Information

Item Value
gene id ndc1
gene name ndc1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 1835741 ~ 1858224 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669999.1
GGCGGGGTCCTCGGCGTGTGTGGCGCGGTGAGCCGTGCAGTTTAAGCTTGAGGAgagaaattataataaaataaagattattaatattttacctGCTATAATGCGCTCATGCTGAGATGCTGTCCTTCAATCAGGACTGTTGGTTCGTGCGGAAGGTGGTCCGGTGGAGAGCTTTAGCCAGTATTGCGTGGTCAGTGCTGCTCCTGCCGGCCACGACAACGCTATTTGTTTTCCTCGTTAGGTTCAGTTTGTTCCATCCTGTGGAGTGGATTTCAGAATGTTTTGGGCTTTTGATGGCTGCGAGCACCATCTTCTCGCTTATCCTGCTGTGTGGTGTCGTGCTCGTGATTGGGTTTTTCAACCTGGAGGGTTACACAGTGGTTCCCTCCATCCCGTGCTCCCGAGTGGCTCTCCTGGCTAAGGTGCTCCACCCGCGGCAGTGTGTTCACTCTCTGGTGCACTGCACTGTGGGTATGATGGTGATGTGGTGTGCGTCGGTGATGGCGGGAGGCCGTTATCAGGCTCTGGGTTCTCCCTGCACGCGAGGCGAGAGTGCCGATGCTCCTGAGGTTTGTCTGAATGAGTATCATGTCTTCCTGCTGCTGGCCGGAGCGTTCATCGGATACAGCCACAGTTTCCTGGGAGTGGTTCAGAATATGAATTATGTCTCCTTTCAGATCATACAGCAGTATAAGTACCTGCGCTGTAAGGGCTCTCTGCCGTGGGTGCTGAAGTGCAGTGCGGTTCAGTCTCTCTACGCTGTGAGGAATTACGTcgctctctatttcttttttgGACATATTCCCAGAGCCTGGATCTCCAACTCACTGAATCTGCCCATCGACAGTTCTCTTCACTCTCTGGACTCGTTGACGGGTTTGCTGGACTTCTCTCTGCTGTATCATCTGTGGATCAGTGGAGCATTCCTGCTGCTCACCTGGTACATCACCGTGCTGCTCTTCAGGATCTACGTTACTGAGGCACACCGATTCCCAGTTCAGTCCACGTTTGCGGAGGATGCAGAGCAGTGTCTTCCTAAAGTCCTGAGTGAGAAGAGGACTCCTATTATGAAGTTTCTGGCGCTGCAGGATCTGGCCTTGCTGTCCCAGCACTCACCGCCCCGCAGACAGGAGGTGTTCAGCCTGAGCCAACCAGGTGGGCACCCTCACAACTGGAATGCCATCAGTAAGGAGTGCCTGGCTCTGCTGAGTGATTTAACACAGCGCCTCGTAGCTCATCACGATGCCGTCGCCTCCAACGGCAGAGCAAGACCTCCATCAGCCACCAGCGACACCAGAACCACCTCCAACAGCTCAGtttcCTCTGCAGTGGTCTCGGGTACAGAGGACCTGCCTCAGACCCCCCGCCCCAGTGTTTTACTAAAGACCCCCGGCTCAGTCTTCCTGAAGTCGTCCGGCAGGGGTATAAGCAGCCCTCTGACTGCCCCCTTCACCCCAGACCTGGACAGCCCCTTCTCCACCCCCTCCCTGCGCCACCTGGCCGCCCAGCAGGTTCCCCAGCAGGGCCAGTGGTTGGGCTCGGTTCAGAGCCCACACATCATTAGGAGGGGTCCTAAACTCTGGAGCACATCCACAGACTCGCAGGCCAATGGCAGTGCTCTGGCCTCACCTGTCCCCACCCCCAGCTCTCCGCCTCCTGAACAGAAATCCAGCTTCATGGCCCAGTGGCTCCAGAACAGGAAGGAACAGGTTAAGGGGTTCATGGCGAAGAGGGTGCTggtagtgtatttatttaataagCTGCCAGAAGCCTCGAGCCAAGCCCTGTTTGCAGACAGCCAAGCTCACATCTGGGCTCTGGAAGGTCTCTCTCATCTGGTGGCTGCTTCTTTCTCTGAGGATAAGTACGGAGTGGTACAGACTACATTACCCAGCATCCTCGGCTGCATGCTGTCTCTGCAAGAGGCTGTGGACAGACACTTTAAGCTGCCTCATGCTTCCAGTAAGCCGGTGAAGACCAGCTGCAGTATGGGAGACTCCACCTACAAAACCCTGCGCTTTGCTCTGAGGGCCGCCCTGAAGACCTCCATCTACAGGATCACGTCTACGTTTGGAGAGCACTTAAATGCGGTGTGTATCTCAGCAGAGCATCAGAAGAGACTGCAGCAGTTCATGGAGTACAGAGAGTAACATGCACCTCCAAAGGACCAGCGGACCTTCAGAGCTCCTCCCatcttttctattattattattattatacacatgcactttgtgagtgtgagtgtgtgtgtgcctgagACCCTGGGAGAGGTCCAAAGAAACTGAGTGTTTGATATCACAATAATCAAGCTTTCGACACTTGATGGATCACTCAAAGCCTTATATGATCAGATCTGGTGCTTGTGTGTTAAATTTCTGTCAATCTGATAATCTGATTCAGCTGTTCATTTCATCACTCAGACAGATTGGTTCAGTTTCAGcctcctgtttttcttttcactcTGAGCGTTGTTAA
>XM_022670058.1
TGGCGGGGTCCTCGGCGTGTGTGGCGCGGTGAGCCGTGCAGTTTAAGCTTGAGGAgagaaattataataaaataaagattattaatattttacctGCTATAATGCGCTCATGCTGAGATGCTGTCCTTCAATCAGGACTGTTGGTTCGTGCGGAAGGTGGTCCGGTGGAGAGCTTTAGCCAGTATTGCGTGGTCAGTGCTGCTCCTGCCGGCCACGACAACGCTATTTGTTTTCCTCGTTAGGTTCAGTTTGTTCCATCCTGTGGAGTGGATTTCAGAATGTTTTGGGCTTTTGATGGCTGCGAGCACCATCTTCTCGCTTATCCTGCTGTGTGGTGTCGTGCTCGTGATTGGGTTTTTCAACCTGGAGGGTTACACAGTGGTTCCCTCCATCCCGTGCTCCCGAGTGGCTCTCCTGGCTAAGGTGCTCCACCCGCGGCAGTGTGTTCACTCTCTGGTGCACTGCACTGTGGGTATGATGGTGATGTGGTGTGCGTCGGTGATGGCGGGAGGCCGTTATCAGGCTCTGGGTTCTCCCTGCACGCGAGGCGAGAGTGCCGATGCTCCTGAGGTTTGTCTGAATGAGTATCATGTCTTCCTGCTGCTGGCCGGAGCGTTCATCGGATACAGCCACAGTTTCCTGGGAGTGGTTCAGAATATGAATTATGTCTCCTTTCAGATCATACAGTATAAGTACCTGCGCTGTAAGGGCTCTCTGCCGTGGGTGCTGAAGTGCAGTGCGGTTCAGTCTCTCTACGCTGTGAGGAATTACGTcgctctctatttcttttttgGACATATTCCCAGAGCCTGGATCTCCAACTCACTGAATCTGCCCATCGACAGTTCTCTTCACTCTCTGGACTCGTTGACGGGTTTGCTGGACTTCTCTCTGCTGTATCATCTGTGGATCAGTGGAGCATTCCTGCTGCTCACCTGGTACATCACCGTGCTGCTCTTCAGGATCTACGTTACTGAGGCACACCGATTCCCAGTTCAGTCCACGTTTGCGGAGGATGCAGAGCAGTGTCTTCCTAAAGTCCTGAGTGAGAAGAGGACTCCTATTATGAAGTTTCTGGCGCTGCAGGATCTGGCCTTGCTGTCCCAGCACTCACCGCCCCGCAGACAGGAGGTGTTCAGCCTGAGCCAACCAGGTGGGCACCCTCACAACTGGAATGCCATCAGTAAGGAGTGCCTGGCTCTGCTGAGTGATTTAACACAGCGCCTCGTAGCTCATCACGATGCCGTCGCCTCCAACGGCAGAGCAAGACCTCCATCAGCCACCAGCGACACCAGAACCACCTCCAACAGCTCAGtttcCTCTGCAGTGGTCTCGGGTACAGAGGACCTGCCTCAGACCCCCCGCCCCAGTGTTTTACTAAAGACCCCCGGCTCAGTCTTCCTGAAGTCGTCCGGCAGGGGTATAAGCAGCCCTCTGACTGCCCCCTTCACCCCAGACCTGGACAGCCCCTTCTCCACCCCCTCCCTGCGCCACCTGGCCGCCCAGCAGGTTCCCCAGCAGGGCCAGTGGTTGGGCTCGGTTCAGAGCCCACACATCATTAGGAGGGGTCCTAAACTCTGGAGCACATCCACAGACTCGCAGGCCAATGGCAGTGCTCTGGCCTCACCTGTCCCCACCCCCAGCTCTCCGCCTCCTGAACAGAAATCCAGCTTCATGGCCCAGTGGCTCCAGAACAGGAAGGAACAGGTTAAGGGGTTCATGGCGAAGAGGGTGCTggtagtgtatttatttaataagCTGCCAGAAGCCTCGAGCCAAGCCCTGTTTGCAGACAGCCAAGCTCACATCTGGGCTCTGGAAGGTCTCTCTCATCTGGTGGCTGCTTCTTTCTCTGAGGATAAGTACGGAGTGGTACAGACTACATTACCCAGCATCCTCGGCTGCATGCTGTCTCTGCAAGAGGCTGTGGACAGACACTTTAAGCTGCCTCATGCTTCCAGTAAGCCGGTGAAGACCAGCTGCAGTATGGGAGACTCCACCTACAAAACCCTGCGCTTTGCTCTGAGGGCCGCCCTGAAGACCTCCATCTACAGGATCACGTCTACGTTTGGAGAGCACTTAAATGCGGTGTGTATCTCAGCAGAGCATCAGAAGAGACTGCAGCAGTTCATGGAGTACAGAGAGTAACATGCACCTCCAAAGGACCAGCGGACCTTCAGAGCTCCTCCCatcttttctattattattattattatacacatgcactttgtgagtgtgagtgtgtgtgtgcctgagACCCTGGGAGAGGTCCAAAGAAACTGAGTGTTTGATATCACAATAATCAAGCTTTCGACACTTGATGGATCACTCAAAGCCTTATATGATCAGATCTGGTGCTTGTGTGTTAAATTTCTGTCAATCTGATAATCTGATTCAGCTGTTCATTTCATCACTCAGACAGATTGGTTCAGTTTCAGcctcctgtttttcttttcactcTGAGCGTTGTTAA
>XM_022670112.1
GGCGGGGTCCTCGGCGTGTGTGGCGCGGTGAGCCGTGCAGTTTAAGCTTGAGGAgagaaattataataaaataaagattattaatattttacctGCTATAATGCGCTCATGCTGAGATGCTGTCCTTCAATCAGGACTGTTGGTTCGTGCGGAAGGTGGTCCGGTGGAGAGCTTTAGCCAGTATTGCGTGGTCAGTGCTGCTCCTGCCGGCCACGACAACGCTATTTGTTTTCCTCGTTAGGTTCAGTTTGTTCCATCCTGTGGAGTGGATTTCAGAATGTTTTGGGCTTTTGATGGCTGCGAGCACCATCTTCTCGCTTATCCTGCTGTGTGGTGTCGTGCTCGTGATTGGGTTTTTCAACCTGGAGGGTTACACAGTGGTTCCCTCCATCCCGTGCTCCCGAGTGGCTCTCCTGGCTAAGGTGCTCCACCCGCGGCAGTGTGTTCACTCTCTGGTGCACTGCACTGTGGGTATGATGGTGATGTGGTGTGCGTCGGTGATGGCGGGAGGCCGTTATCAGGCTCTGGGTTCTCCCTGCACGCGAGGCGAGAGTGCCGATGCTCCTGAGGTTTGTCTGAATGAGTATCATGTCTTCCTGCTGCTGGCCGGAGCGTTCATCGGATACAGCCACAGTTTCCTGGGAGTGGTTCAGAATATGAATTATGTCTCCTTTCAGATCATACAGCAGTATAAGTACCTGCGCTGTAAGGGCTCTCTGCCGTGGGTGCTGAAGTGCAGTGCGGTTCAGTCTCTCTACGCTGTGAGGAATTACGTcgctctctatttcttttttgGACATATTCCCAGAGCCTGGATCTCCAACTCACTGAATCTGCCCATCGACAGTTCTCTTCACTCTCTGGACTCGTTGACGGGTTTGCTGGACTTCTCTCTGCTGTATCATCTGTGGATCAGTGGAGCATTCCTGCTGCTCACCTGGTACATCACCGTGCTGCTCTTCAGGATCTACGTTACTGAGGCACACCGATTCCCAGTTCAGTCCACGTTTGCGGAGGATGCAGAGCAGTGTCTTCCTAAAGTCCTGAGTGAGAAGAGGACTCCTATTATGAAGTTTCTGGCGCTGCAGGATCTGGCCTTGCTGTCCCAGCACTCACCGCCCCGCAGACAGGAGGTGTTCAGCCTGAGCCAACCAGGTGGGCACCCTCACAACTGGAATGCCATCAGTAAGGAGTGCCTGGCTCTGCTGAGTGATTTAACACAGCGCCTCGTAGCTCATCACGATGCCGTCGCCTCCAACGGCAGAGCAAGACCTCCATCAGCCACCAGCGACACCAGAACCACCTCCAACAGCTCAGtttcCTCTGCAGTGGTCTCGGGTACAGAGGACCTGCCTCAGACCCCCCGCCCCAGTGTTTTACTAAAGACCCCCGGCTCAGTCTTCCTGAAGTCGTCCGGCAGGGGTATAAGCAGCCCTCTGACTGCCCCCTTCACCCCAGACCTGGACAGCCCCTTCTCCACCCCCTCCCTGCGCCACCTGGCCGCCCAGCAGGTTCCCCAGCAGGGCCAGTGGTTGGGCTCGGTTCAGAGCCCACACATCATTAGGAGGGGTCCTAAACTCTGGAGCACATCCACAGACTCGCAGGCCAATGGCAGTGCTCTGGCCTCACCTGTCCCCACCCCCAGCTCTCCGCCTCCTGAACAGAAATCCAGCTTCATGGCCCAGTGGCTCCAGAACAGGAAGGAACAGCTGCCAGAAGCCTCGAGCCAAGCCCTGTTTGCAGACAGCCAAGCTCACATCTGGGCTCTGGAAGGTCTCTCTCATCTGGTGGCTGCTTCTTTCTCTGAGGATAAGTACGGAGTGGTACAGACTACATTACCCAGCATCCTCGGCTGCATGCTGTCTCTGCAAGAGGCTGTGGACAGACACTTTAAGCTGCCTCATGCTTCCAGTAAGCCGGTGAAGACCAGCTGCAGTATGGGAGACTCCACCTACAAAACCCTGCGCTTTGCTCTGAGGGCCGCCCTGAAGACCTCCATCTACAGGATCACGTCTACGTTTGGAGAGCACTTAAATGCGGTGTGTATCTCAGCAGAGCATCAGAAGAGACTGCAGCAGTTCATGGAGTACAGAGAGTAACATGCACCTCCAAAGGACCAGCGGACCTTCAGAGCTCCTCCCatcttttctattattattattattatacacatgcactttgtgagtgtgagtgtgtgtgtgcctgagACCCTGGGAGAGGTCCAAAGAAACTGAGTGTTTGATATCACAATAATCAAGCTTTCGACACTTGATGGATCACTCAAAGCCTTATATGATCAGATCTGGTGCTTGTGTGTTAAATTTCTGTCAATCTGATAATCTGATTCAGCTGTTCATTTCATCACTCAGACAGATTGGTTCAGTTTCAGcctcctgtttttcttttcactcTGAGCGTTGTTAA

Function

symbol description
ndc1 Predicted to enable protein-macromolecule adaptor activity. Predicted to be involved in nuclear pore organization. Predicted to act upstream of or within mRNA transport and protein transport. Predicted to be located in nuclear membrane. Predicted to be integral component of membrane. Predicted to be part of nuclear pore transmembrane ring. Orthologous to human NDC1 (NDC1 transmembrane nucleoporin).

NR:

description
nucleoporin NDC1

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0051028 mRNA transport biological_process
GO:0005643 nuclear pore cellular_component
GO:0031965 nuclear membrane cellular_component

KEGG:

id description
K14315 NDC1, TMEM48; nucleoporin NDC1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669999.1 True 2475 mRNA 0.53 18 1835741 1858223
XM_022670058.1 False 2473 mRNA 0.53 18 1835741 1858224
XM_022670112.1 False 2424 mRNA 0.53 17 1835741 1858223

Neighbor

gene id symbol gene type direction distance location
LOC103044599 glis1,LOC107602512,LOC106952155 coding downstream 2709 1796561 ~ 1833032 (-)
LOC103045337 NA coding downstream 43613 1783204 ~ 1792128 (-)
best4 best4,LOC106569841,LOC108262062 coding downstream 62850 1764264 ~ 1772891 (-)
acadm acadm,LOC107674066,LOC107602542,LOC107688505,LOC107584839 coding downstream 106355 1719812 ~ 1729386 (-)
rabggtb rabggtb,LOC107732517,LOC107584851,LOC107576861 coding downstream 118087 1707739 ~ 1717654 (-)
LOC103041746 LOC103041746,LOC108432452,LOC107602511 coding upstream 2189 1860413 ~ 1862727 (-)
LOC103038761 NA coding upstream 94514 1952738 ~ 1967670 (-)
LOC103039897 NA coding upstream 140876 1999100 ~ 2005172 (-)
LOC103039590 LOC103039590 coding upstream 152045 2010269 ~ 2011178 (-)
LOC103039280 stk25b,LOC108432500,LOC107585675,LOC107722570,LOC108278137,LOC107693719,LOC107589848 coding upstream 180662 2038886 ~ 2052143 (-)
G589 rps8,rps8a,LOC107674081,LOC107688507,LOC107602544 non-coding downstream 72118 1757980 ~ 1763623 (-)
G504 NA non-coding downstream 79427 1754379 ~ 1756314 (-)
G502 hectd3,LOC107729394 non-coding downstream 81887 1751182 ~ 1753854 (-)
G496 hectd3 non-coding downstream 97824 1736394 ~ 1737917 (-)
G476 ptbp1a,LOC107729315,LOC107584874,LOC108432475,LOC107602545,LOC107674042,LOC107688524,LOC107732511 non-coding downstream 312996 1511045 ~ 1522745 (-)
G608 NA non-coding upstream 19285 1877509 ~ 1894453 (-)
G616 sept2 non-coding upstream 158332 2016556 ~ 2035389 (-)
G644 NA non-coding upstream 208351 2066575 ~ 2067409 (-)
LOC111192756 NA non-coding upstream 218851 2077075 ~ 2079605 (-)
G653 NA non-coding upstream 234199 2092423 ~ 2092992 (-)
LOC111197534 NA other downstream 979581 855579 ~ 856160 (-)
LOC103037308 LOC108440474,LOC108278112,LOC107585786,LOC107669856,LOC107745208 other downstream 1165026 589669 ~ 670715 (-)
yipf1 yipf1 other upstream 6291 1864515 ~ 1873127 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other upstream 62256 1920480 ~ 1928255 (-)
znf414 NA other upstream 565489 2423713 ~ 2434401 (-)
G807 NA other upstream 691992 2550216 ~ 2600511 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other upstream 1052530 2910754 ~ 2970340 (-)

Expression


Co-expression Network