LOC111192762


Basic Information

Item Value
gene id LOC111192762
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 4391946 ~ 4393659 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671117.1
CATACTCTGTTTAGGTTTTGAGGTACTACTGCAGATCATGCATTATTTAGGTCATGGGAATATTTTCACATTCAATATGACAGCtgttttttataattctttACAGGACAGGAAAAATATCTAATATAACTTGATTTATCCCTAAATATTTGCATGGTTAAAATAACTGGCTTGTTCTTTTTACAGCTGTGTATGATTCTGGTATTTATTGTTTGcagaattattgtttttaactgcagtgtTTTATTTCAAGATGTGTACAGCAGAGTGTAACAGCAGCTGGAATGAAAGCAGCTTTGACTTGTTGGACCTGGACAGTTCTGCCTTACTGAGGATGAATATTGGACTAACGTTAACTCAGATGTTTGTCTGGCCTTTTCTCCTCATCAACATCCTCATGCTTTTCACTTTCTACAGGAAACAGGCTTTCAGAACTGAGACCCGTTATATACTGTTTGCTCACACCTTACTGACTGAcgtgatttttcttttactgaCGGATCTTCAGGTCATTCTCAAATACAATGTTGTTCAGATGCCTGTGTCATTCTGTATTCCACTGTGTATTCTAATAGAGGTAGTTAATACCTGCACCCCGCTAACAATCACTGCAATGTGTGTGGAGCGTTATGTAGCCATCTGCATGCCTCTGAGACACAGTGCCATCTCCACCACCAGCAGAACAATTAATGTTATTCTTATTATCTGGATCATGAGCTTTATAGTACCGTTTATGGATGTTATCATTCTCATTGTATCTGTACCAGAAGAGTATTTTATAGAGCCCACTCTCTGCCATTATGAGATAATGATGCTGGAGCACTGGCATCGTAACATGAGGAGTATCTGgtacatttttgatttttttattattttactgataGAGTTTTTTTGCTATCTGATGATAATGATTGCTGCCCGCAGAGCCTCTGTTGATAAAAAGTCTGCAGCGAAAGGGCTTAGAACTGTCTCACTGCACATGATTCAGCTCATTCTCTGCACTGTTCAATCTGTGTGTCCCTATGTAGAAGCAGAAATCATAGAAATAGATTTCACGTTATATTTATCAGTCCGACTTTTcaattttcttacatttaacATCATCGCCAGAGCAATTACTCCACTTGTCTATGGCATCAGAGATGAGACGTTTTGTGCTGCCCTGCTGCATTATATCAAATGTAGACAAAATCACATCTcatcagaaaagaaagaacCAAACTTTTAAGTTTTCTGAAATTCAATATTGCTACTATAAAACATCTCACATGaatattaaagctatatttattaaatatataagtacAGAACTAGGGCACTCTTACGCTTTATTGTCTGCTATGTTTTCATCTACACTTCCtataatttttttcatgtttatcaGGTACAAGTAATAATACTTTACATACTTTTTACAtacttgatttaaaataaatgattcaaaGCTTAAACTAGTCTTAAAGGCCATGTTCTGTTTAAGCCCACTTCAGTGttcaacattttttacatttatttataaatgcttATTCACTTCATTTTGTTTGCAAAACTGTACACAGCTCAGTAACCTGAAGGCTGGGATGTGCAGACAGTGTGCAGTATAAGTAACTAACACTTTTAATATCCTTATTTAGAACGGTCCCAttaacatgtttatttcctGAAATCCTGATAGTAATGAAGTCAATGAGATCAAAACCTATTacttgtagta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671117.1 True 1714 mRNA 0.35 1 4391946 4393659

Neighbor

gene id symbol gene type direction distance location
LOC111192761 NA coding downstream 2966 4387247 ~ 4388980 (-)
LOC103028190 LOC103028190 coding downstream 53152 4334848 ~ 4338794 (-)
LOC111193765 NA coding downstream 154501 4220875 ~ 4237445 (-)
LOC103027148 NA coding downstream 171030 4214015 ~ 4220916 (-)
dnhd1 NA coding downstream 184423 4149693 ~ 4207523 (-)
LOC107197778 NA coding upstream 341379 4735038 ~ 4747924 (-)
irs1 irs1,LOC107577679 coding upstream 512082 4905741 ~ 4943017 (-)
LOC103027032 NA coding upstream 579887 4973546 ~ 5101897 (-)
fbxo46 fbxo46,si:dkey-114g7.4,LOC107672409,LOC107561382 coding upstream 928954 5322613 ~ 5331630 (-)
LOC103027738 si:ch211-11n16.2,LOC108442869,LOC108278225,LOC107678255,LOC107749652,LOC107561380,LOC105909327,LOC107758522 coding upstream 1075575 5469234 ~ 5489576 (-)
G1374 NA non-coding downstream 10820 4380598 ~ 4381126 (-)
G1363 NA non-coding downstream 36814 4354873 ~ 4355132 (-)
G1353 NA non-coding downstream 115152 4275838 ~ 4276794 (-)
G1324 NA non-coding downstream 230073 4161479 ~ 4161873 (-)
G1323 NA non-coding downstream 235106 4156601 ~ 4156840 (-)
G1385 NA non-coding upstream 253122 4646781 ~ 4655868 (-)
G1399 NA non-coding upstream 289575 4683234 ~ 4683540 (-)
G1414 NA non-coding upstream 311928 4705587 ~ 4705946 (-)
G1421 NA non-coding upstream 323474 4717133 ~ 4717442 (-)
G1425 NA non-coding upstream 339978 4733637 ~ 4733883 (-)
LOC111193783 LOC108442858 other downstream 70606 4276909 ~ 4321340 (-)
LOC111193794 LOC108442858 other downstream 119976 4267001 ~ 4271970 (-)
G1308 NA other downstream 290380 4099765 ~ 4101566 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other downstream 482275 3882370 ~ 3909671 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other downstream 946560 3394204 ~ 3445386 (-)
LOC103031123 LOC108411357 other upstream 1310047 5703706 ~ 5721108 (-)
nlk nlk2,nlk,LOC107682651,LOC107666197,LOC106581270 other upstream 4560218 8953877 ~ 9092112 (-)
LOC103037880 LOC108432996 other upstream 4719820 9113479 ~ 9133571 (-)
hspa13 hspa13,LOC107682527,LOC107666191,LOC107714176 other upstream 5352963 9746622 ~ 9755755 (-)
rap1gap2 rap1gap2 other upstream 5853806 10247465 ~ 10461860 (-)

Expression


Co-expression Network