thap4 (thap4)


Basic Information

Item Value
gene id thap4
gene name thap4
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 2067978 ~ 2073643 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671325.1
AAGAGGCGGGCTTAACTTTGACAGGCTGTTAGCTCGCTATGCTAATCTGTGCTGTTTTTAGTAGCTGTTTGTCGggtttagagtatttatttcaGATCAGCTCTGGAAGAGAATTAAAGCTCGGCTGTGGAACAGCATGTCGTGTCCGGTGATTCACTCCGCAGCTGTGGATCTGAATGTAGCTGTGCTGCCCCTGGAATGGCTTTTGGGCTCCTGGGAGTCGGACGAGCCAGGCGAGGGGTCTTTTCCCTCCATCGCACCGTTCCGCTACACCGAGACCCTGCACTTCTCTCATGTGGGACAGCCTGTGATCAACTTCATGTTTAATGCTTTTCATGCAGAGAGCAGAAAGCCCCTTCATAGAGAATGTGGATTTATCAGGATTCAGCCTGGCACGAACAACCTGGCCTTCATCATCGCTCAGAACTCAGGGCTAGTAGAAATTGAGGAAGGTGAGCTGATTGGTCAGCAGGTGATCCTGCAGAGCCGGGCATTGGCCAGAACTTCTTTTGCCAAGGAGCCGCACGTTCAACAGATCTCCAGGCTCTTTCAGCTGAGGCCCGATGGCAGACTGGAGCAGACAGTGTCCATGGCACTGGAGAACCAGCCTCTGACCCAGCATCTGCACATTACCTACCGCAGAGCCTCCTGACCACTGAGGATCCGGGGAATGAAGACGGAGGATACGGCATTACCCGTCCGACACATGATTAATGTACtatgcattaatattaatgcacatctCACTGCACTTATGATACAATAACAGATAATAAATACATCTGGGGGCACTGAA
>XM_022671381.1
AAGAGGCGGGCTTAACTTTGACAGGCTGTTAGCTCGCTATGCTAATCTGTGCTGTTTTTAGTAGCTGTTTGTCGggtttagagtatttatttcaGATCAGCTCTGGAAGAGAATTAAAGCTCGGCTGTGGAACAGCATGTCGTGTCCGGTGATTCACTCCGCTGTGGATCTGAATGTAGCTGTGCTGCCCCTGGAATGGCTTTTGGGCTCCTGGGAGTCGGACGAGCCAGGCGAGGGGTCTTTTCCCTCCATCGCACCGTTCCGCTACACCGAGACCCTGCACTTCTCTCATGTGGGACAGCCTGTGATCAACTTCATGTTTAATGCTTTTCATGCAGAGAGCAGAAAGCCCCTTCATAGAGAATGTGGATTTATCAGGATTCAGCCTGGCACGAACAACCTGGCCTTCATCATCGCTCAGAACTCAGGGCTAGTAGAAATTGAGGAAGGTGAGCTGATTGGTCAGCAGGTGATCCTGCAGAGCCGGGCATTGGCCAGAACTTCTTTTGCCAAGGAGCCGCACGTTCAACAGATCTCCAGGCTCTTTCAGCTGAGGCCCGATGGCAGACTGGAGCAGACAGTGTCCATGGCACTGGAGAACCAGCCTCTGACCCAGCATCTGCACATTACCTACCGCAGAGCCTCCTGACCACTGAGGATCCGGGGAATGAAGACGGAGGATACGGCATTACCCGTCCGACACATGATTAATGTACtatgcattaatattaatgcacatctCACTGCACTTATGATACAATAACAGATAATAAATACATCTGGGGGCACTGAA

Function

symbol description
thap4 Orthologous to human THAP4 (THAP domain containing 4).

NR:

description
THAP domain-containing protein 4

GO: NA

KEGG:

id description
K23205 THAP4; THAP domain-containing protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671325.1 True 796 mRNA 0.51 5 2067978 2073643
XM_022671381.1 False 793 mRNA 0.50 5 2067978 2073643

Neighbor

gene id symbol gene type direction distance location
LOC103039280 stk25b,LOC108432500,LOC107585675,LOC107722570,LOC108278137,LOC107693719,LOC107589848 coding downstream 15835 2038886 ~ 2052143 (-)
LOC103039590 LOC103039590 coding downstream 56800 2010269 ~ 2011178 (-)
LOC103039897 NA coding downstream 62806 1999100 ~ 2005172 (-)
LOC103038761 NA coding downstream 100308 1952738 ~ 1967670 (-)
LOC103041746 LOC103041746,LOC108432452,LOC107602511 coding downstream 205251 1860413 ~ 1862727 (-)
LOC103036651 LOC103036651,LOC108432502,LOC105899541,LOC105028795,LOC108278136,LOC107718120 coding upstream 29827 2103470 ~ 2112159 (-)
LOC103037376 NA coding upstream 250963 2324606 ~ 2372955 (-)
LOC103036044 LOC108432506 coding upstream 302604 2376247 ~ 2395365 (-)
LOC103037050 LOC108432507 coding upstream 331720 2405363 ~ 2422641 (-)
LOC111193163 NA coding upstream 466173 2539816 ~ 2542341 (-)
G644 NA non-coding downstream 569 2066575 ~ 2067409 (-)
G616 sept2 non-coding downstream 32589 2016556 ~ 2035389 (-)
G608 NA non-coding downstream 173525 1877509 ~ 1894453 (-)
G589 rps8,rps8a,LOC107674081,LOC107688507,LOC107602544 non-coding downstream 304355 1757980 ~ 1763623 (-)
G504 NA non-coding downstream 311664 1754379 ~ 1756314 (-)
LOC111192756 NA non-coding upstream 3432 2077075 ~ 2079605 (-)
G653 NA non-coding upstream 18780 2092423 ~ 2092992 (-)
G655 NA non-coding upstream 22577 2096220 ~ 2101575 (-)
G671 NA non-coding upstream 71785 2145428 ~ 2226561 (-)
G684 NA non-coding upstream 112464 2186107 ~ 2193511 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other downstream 139723 1920480 ~ 1928255 (-)
yipf1 yipf1 other downstream 194851 1864515 ~ 1873127 (-)
LOC111197534 NA other downstream 1211818 855579 ~ 856160 (-)
LOC103037308 LOC108440474,LOC108278112,LOC107585786,LOC107669856,LOC107745208 other downstream 1397263 589669 ~ 670715 (-)
znf414 NA other upstream 350070 2423713 ~ 2434401 (-)
G807 NA other upstream 476573 2550216 ~ 2600511 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other upstream 837111 2910754 ~ 2970340 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other upstream 1320561 3394204 ~ 3445386 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other upstream 1808727 3882370 ~ 3909671 (-)

Expression


Co-expression Network