LOC103028436


Basic Information

Item Value
gene id LOC103028436
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 3490872 ~ 3503293 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674427.1
aaagtggccacccgAGCAGAGAAACCGCGTCCGCGCGCCCTCTGCTGGCCGTTGCGCACAGTTTCCGCGCGCAGGCTCACTGCCGCTCCTGCCCATAGCCGTTCCCTCCGCTCCACTTCACACCCCTCCGCCGCGGACTGATCGATACCCAGCCCGGACTACCCGAGTCAAACCCCTCTCTATGAGTTACTCCGAGCGCGTGGCCTCGTGGTTGTGGTCCCTGTGCGCGCGCGTGCTCGAAGCATGCTGGAAAAGGCTGGAGATGATCTCGGTGTGGCTGCTGTTCCTGAAGCTGCTGAGAGCCACAGCTGGTGTCACAAGGCCAAATGGGAATGAAATAACCGAAGCCAGGAGAGACTCTTTAAATCAGCAACAAAAAGAGCAAGAATTCCTCTCCAAGGCTGTCACCATGGAGACCAGCCAGCTTTCAGAAATGGCTGATGTAAAAGACTATAAAATGGATCTGGGGGACACAGAGGAGGAAAAACGCCAGCGGAGTGAGGAGGATGAAAGAGACTGCTTCAATGCATTTTTCTCCGAAAGCCTGGATACTGAAAAGAGCAACTCCCCAACTGTGATCGAGGACAAAAGCAATGACGTAGCCAATGATAGTGCAAGTTCCGAGGAAGCCGTCAAAAGCACACCCTTGCAGGACGAGATCACGGAAATGGTGAATGATATAAATGAGTCAACACATCTTAGAGAGTCCACATCGTCTCCAGAGCCAGATGCAGAACACCAAACCCAAAACCAGCCTGTGCAAGGTGAAGAAGACGACAATGACAAGAATCCACCTGCACTGAATGGCAATGGGACAGAGCACCAGGAAGTATTGGAAAGTTCAGAGTCAGTTCAAACACCTTTGAATGTCAGTGGGGAAGAGAACCAAAACCTACAGGACGGTCTGCAAGTAGCGCAAGAAGACAACAATTTACCTGCTTTGGGTGCCAATTGGGAAGAGCACCAGGATCTGCAGGATGGTCTGCAAATAGCGAAAGAAGACAACTCACCTGCTTTGGATGACAATGGGAAAGAGCACCAAGATCTTCAGGAAGGTCTAAACATTGAGCAAGAAGACAATGACCCATCAACCCATTGTGATGACAATATGGAAGATCACCATGACCTGCAAGAAGGTCTAAACATTGAGCAAGAAGACAATGACCCATCAACCCATTGTGATGACAATATGGAAGATCACCATGACCTGCAAGAAGGTCTGAAAATAGAACAAGAAGATAATGACCCATCAACCCATTTAAATGACAACAAGGAAGAACACCAAGACCTGCTGGAGGGTCTGAAAGTAGAACAAGAGGAAAAGGAAGCATCTGCTTTGGATGCCGACAGGGAAGAACACCAAGACCTGCAAGAAGGTCTGAAAATTGAGCAAGAAGAGAACTATCCATTCACAGCTGAGGCCACCGAGACAGATCACAAAGATCAGCAGGAGAGTCCAAAACCAGAACAAGAATCTGTGTTGGAGCAGCAAATCAAGGAGCTAGCCGTCTCAGATGCCTCCACAGAGTCTTGCCATGACAATGACAGAGATGATCTGAGCGACTGTCTGCAGGTGGAGATGGCCATTGTTTCATCAGACAGTGATGCTGAGGAGCAGTGGAAGTCCATGTTTTCTCCTGTGGTTGATGAAGAGGATACTGCGGACGCTGTGGGGCTGGATCCAATTGATGCTAGCGAAGAGCCACACAATCAAGAAGATGCAGATGCAACTAAAGAAGACAGCAATACAACACTGGAGAATAATATGGAACTTGAAAGTGAAGCTCTGACAGGGACCATCGATAGCGTTGATATCTTGGAACAGCCAGAATGCCCTACGGAATGTGAACTAGAGGACCTTTCTTTTGATGGCTCTATACACTACCGAAGTTTAACAAAGATTCCAGAGGACGAAGAAGATTCAAACCAAAACCCAAAGCATAGCCTGCAGCGATTGTCCGCCTCAACCTCTGAGCTCGACAAGAGGTTGCCTCAAGACTACTGCGTGATTGAGGAGACAAAGAGCGAGAATGTCAGCACTGAACATGTGGACTTCAGGGTGGCTCGCCAACAGTGGCAGAAGATGGCAGAACAGAACAAGGGCCAGTTGCACCAGACCCCCATCAAGCAGGCTATTTGTCAAGGAGGCCATAACTACATGTACACACCTGTTCGTACGTTAGAACGCCCTAAGAAAGACCAAGACTCTGACAGTTTAAGTCTTGGTGATTTCCAGTACACCCAGTTTAGCCCTTGCTCGGAAGACTCAGGGCTGGACGACACAAGCTACAGGTCTCCTTACGATGAGCCTGAAACTCCAGTCGAACGAGAGATCCGTGAGACTATGGAACGAGAAGAATCTTTCAGACGAGAACGGGCCCTGTCAAGGTCATCTTCTGGTGAACCTATACAAAGCAAACCTAGACCAGCCACCTTGCTGACAGGTAGATCAGAGCAAGAAGtcagaaaaatatttaacacaCCTGAGGACAGGTGCAGGTCTCAGAGATCACCAAGTTCAAGAACCCCAACTTTCTCCATTACAGCCTCACCATCATCGAGACCATCCTACCATGAGATGGTAGCCAACAATGTCATCATCCTGGAGCCAGATTCGTATCCCACAAGCCCGAGGCACAGGGGGAAAGGACTGCTCTCTCCAGGATCAAACAGGTTCCATGAGTGGCCCTCAGAAATGACCAATGTCATCATATTGGAAACGTCGAATCTCATCATCCGAAGTGCGTCAGAGTTCTGTCTGAGCACCACATGTCAGGAGACACAGGAGAGCACCTTCCACAACAACCCCTTCTTCAAACTGAGGTCGCACAGCACACAGTCCCTGGTGGACCAGGAGATCAAGGTGGTGAGGCAGAGGGATGAGGAGTTCAGGAGACAGAGGGCGCAGTTATATGCCAAAGAGAAGTACGACACCGTCCTGGTGTCTCCCAGCTTACTGGAGAGCTTCAACTACGACAGACCAGGAGATATACCAGCCAGATGCAAGTCCTCCCCGTCCTCCCCTTCTAAGATACGCAAGATGGACCGGTCTGTTTTGTCCTGTGATCAGAAGGTATTTCTTACATGCTGTAATTCATATCTCATTCGAGTCTAAGGATAATGCAGCATTATTATACACTCAGGTTTATTTTCCAGTAGCCACCCTGAACACAGTGCAACATGGCAATATGAGTTTTGAGCTACAGAAAGTTACACAAGTTATTAATCAAGTGTGCTGGTTGGTTCTGGCCAAAAGGTTAATACCATAATTGCCAAATGTCCCTGTAATCCCATTAATTAGATGAAAGGTCCAGCTGTTACAGATTTTACAGCTTTTTTGACGTTTGATGTCTATTAGTTAAATTCCGCTAGAGCCTCTTTCACACCCTGATGTTTAACAGGAATTAAATGTTATCCAAGTTCTTAATAACGATTCATCTTAGAGAAGTAACTTTAAAAATGTCGGTTTTGTGCCTGaaaacagagactgtaaaaaaaagatggacgctgtgtcgccattcccattccttcaatgaaaatgaagtcaaaatcttcctccatgttggcgatcctgaaacccgagtctgcgcagtagagaccagaggagggagttTACATTATCTAGCTTTCTGTTTTAATGGTTGAAAATTCTAAACgcaaaaaaggcatgtactaatgcTCCTAACCAATCATGGGTGTGTCCTTTTAgtagccaggtgcgctctgactttggcggttGCTATTTCAAGGGTGCatcttgttttttaaacacttctcagcagaggaaacttaCCTGTTCGTTCAGActcattca

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0006813 potassium ion transport biological_process

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04724 Glutamatergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674427.1 True 3814 mRNA 0.48 3 3490872 3503293

Neighbor

gene id symbol gene type direction distance location
LOC103033290 NA coding downstream 107750 3376610 ~ 3383122 (-)
olfml2b olfml2b,LOC107718167 coding downstream 174851 3297813 ~ 3316021 (-)
LOC103033918 LOC108431152,LOC106599103,LOC106568909,LOC108278312 coding downstream 273851 3189007 ~ 3217021 (-)
LOC111193343 prg4 coding downstream 311278 3163711 ~ 3179594 (-)
c1h1orf27 cunh1orf27,LOC103031066 coding downstream 376103 3099846 ~ 3114769 (-)
LOC103032346 NA coding upstream 13331 3516624 ~ 3554189 (-)
LOC103032017 LOC108441573,LOC107693752 coding upstream 100893 3604186 ~ 3666404 (-)
ap1s3 NA coding upstream 335576 3838869 ~ 3849326 (-)
serpine2 NA coding upstream 423807 3927100 ~ 3957131 (-)
LOC103026864 LOC107669897 coding upstream 465927 3969220 ~ 4005230 (-)
G1224 NA non-coding downstream 16008 3474189 ~ 3474864 (-)
G1214 NA non-coding downstream 104641 3385373 ~ 3386231 (-)
G1211 NA non-coding downstream 117257 3368803 ~ 3373615 (-)
G1013 NA non-coding downstream 193226 3296240 ~ 3297646 (-)
G1017 NA non-coding downstream 196090 3294576 ~ 3294782 (-)
G1238 NA non-coding upstream 74936 3578229 ~ 3585540 (-)
G1234 NA non-coding upstream 92450 3595743 ~ 3599731 (-)
G1247 NA non-coding upstream 114939 3618232 ~ 3650378 (-)
G1267 NA non-coding upstream 376271 3879564 ~ 3881731 (-)
G1290 NA non-coding upstream 502869 4006162 ~ 4009880 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other downstream 45486 3394204 ~ 3445386 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other downstream 520532 2910754 ~ 2970340 (-)
G807 NA other downstream 890361 2550216 ~ 2600511 (-)
znf414 NA other downstream 1056471 2423713 ~ 2434401 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other downstream 1562617 1920480 ~ 1928255 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other upstream 379077 3882370 ~ 3909671 (-)
G1308 NA other upstream 596472 4099765 ~ 4101566 (-)
LOC111193794 LOC108442858 other upstream 763708 4267001 ~ 4271970 (-)
LOC111193783 LOC108442858 other upstream 773616 4276909 ~ 4321340 (-)
LOC103031123 LOC108411357 other upstream 2200413 5703706 ~ 5721108 (-)

Expression


Co-expression Network