LOC103032346


Basic Information

Item Value
gene id LOC103032346
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 3516624 ~ 3554189 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674501.1
TTAGAGCTCTCTGAAGGCTCCAACTTTCTTCAGCTCCTCCTCGTGTTTAGGCCTCAGACAGCTGATTTGTTGAATTATCGGACTGTCTATCTGGCTTTGGATCTTGGACTGTTTCCTGTACTACGATTCCTGCTTCGAGTAGTCAGGATGGAAGAAGCGGAGCTGCTAAAAGAGCGCCTTCAAGCCATCACGgacaaaagaaaaatacaggaGGACATCGCTTCAAAGCGGCTGGAGATTGACAGAGAGAAATTAAAACTCCAGCACTTTAAGAAAAAGTCCATGCGGGATCTTTGGCTGATGGATGGAGCGAGTGCTGAGAGTGGTCAGGAGTCTCAGAAAGCTCAGGAAGACGCTCAACAGGCCAAACTACTGCAGCGCAACATTCACAGGATAGAGAAAGAAATCGAGGCTCTGGAGAGAGAAGAGCTCAATATTTCCACAAACGAAGGCCTAATTCTGAAGAGACTGAAAGCCATTGAGAAATCTACAGAGGACATAATTAAGGCAGCAAATGAAAACTTCAAATCAGAACCCATCCACAGTTACTCAGGACTTCAAGACACAAagacatcacacacacctctaaACCGGAGGAAACTGTCCACTCCAAGTGACCAAGACTCCAAAAatgaccaaaacaaaccagCCTTATTCGCCATGGAAATCAACGTCCAGAAGGACCTACGTACAGGCGAAAGCCGCGTCATCTCCACCTCCACCGTATCCACCCAAGAGCTCCAGAACAGGGGCATCAAGGTGTACGACGACGGGCGCAAATCTGTTTATGCCCTCCGCTCGGATGCCATCCAGCCTGGAGCCAACGGAGTGGACGAGCTCAGTCCTACGGAAGTGGAGGAACTCCTCCGTCAGGCCACGGAAAAGAAGAAGCGACTCCAGGAGAGCAAGGATCCTCCATTCAGCATGAACTACAACCGCTCACCCTCACCTCTGGGCAAGCCCCACCAAGACCAGTACGCTAATGGCTACCTCCCCGAGCCGCTCAGTGCGGATGGGCTGACGTGGCCTGAGCTGATATACTGCGACGGTGAAGTGCATTACCCTGGGCAGGACCACCACCCACCCGCACACATGTTCCACCACTACGCTGACGGGGAACCGGGGTATTACACCAGCAATGGGAACAGTTACGGAGATGAGGAATGTTTTACAGTGCACGGAGAAATGAGGCAACACAGTCACGGCCCGTTCTACAACCCCCAAGACCCCCACAGAGGAACTCATCACATGGATCAGGATCAGAACCTCAGGCCGACCTCAGCCTACAGCACCGACTCCAGAATCAGCGTGCTGAACGCCCTGCCTTCAGACGAGCCCGTCACCATGATCTTCATGGGCTATCAGACTGCGGAGGGAGAAGGTACCGACAGCTACGAGGGCTCCGTCCGGGCCGAGCTCGTCGTCATCGGGGATGAAGAGGAAGGCCACAGTGCCCGTCCCCACCAGAGCCACCAGAACTGCAACGCCAACAACGCATCCCAGCACCAGCTCCAAGCCACAGGGGGCGCCAAAGCTACACAGAAGGGGAGCGGAAAAAAAACGAGGCCAGAGAGTCTAGGCCCTGCTGGAGTTCATTCCAGAGTGACCGGAGTGACCAGAGTGACCAGAAAGGCCACAGAAAAGGTCATGGAAGAAAATTACTGACCACAAGCTCATGAAGAACCACCAGCTGCAGCGTTCTAAAAGTGTCCGGCGGAAATCAATAAAGCAAGAAAGAATGAATAGAAGA
>XM_022674557.1
GCCAAGTAGTATTAGAGCTCTCTGAAGGCTCCAACTTTCTTCAGCTCCTCCTCGTGTTTAGGCCTCAGACAGCTGAGTCAGGATGGAAGAAGCGGAGCTGCTAAAAGAGCGCCTTCAAGCCATCACGgacaaaagaaaaatacaggaGGACATCGCTTCAAAGCGGCTGGAGATTGACAGAGAGAAATTAAAACTCCAGCACTTTAAGAAAAAGTCCATGCGGGATCTTTGGCTGATGGATGGAGCGAGTGCTGAGAGTGGTCAGGAGTCTCAGAAAGCTCAGGAAGACGCTCAACAGGCCAAACTACTGCAGCGCAACATTCACAGGATAGAGAAAGAAATCGAGGCTCTGGAGAGAGAAGAGCTCAATATTTCCACAAACGAAGGCCTAATTCTGAAGAGACTGAAAGCCATTGAGAAATCTACAGAGGACATAATTAAGGCAGCAAATGAAAACTTCAAATCAGAACCCATCCACAGTTACTCAGGACTTCAAGACACAAagacatcacacacacctctaaACCGGAGGAAACTGTCCACTCCAAGTGACCAAGACTCCAAAAatgaccaaaacaaaccagCCTTATTCGCCATGGAAATCAACGTCCAGAAGGACCTACGTACAGGCGAAAGCCGCGTCATCTCCACCTCCACCGTATCCACCCAAGAGCTCCAGAACAGGGGCATCAAGGTGTACGACGACGGGCGCAAATCTGTTTATGCCCTCCGCTCGGATGCCATCCAGCCTGGAGCCAACGGAGTGGACGAGCTCAGTCCTACGGAAGTGGAGGAACTCCTCCGTCAGGCCACGGAAAAGAAGAAGCGACTCCAGGAGAGCAAGGATCCTCCATTCAGCATGAACTACAACCGCTCACCCTCACCTCTGGGCAAGCCCCACCAAGACCAGTACGCTAATGGCTACCTCCCCGAGCCGCTCAGTGCGGATGGGCTGACGTGGCCTGAGCTGATATACTGCGACGGTGAAGTGCATTACCCTGGGCAGGACCACCACCCACCCGCACACATGTTCCACCACTACGCTGACGGGGAACCGGGGTATTACACCAGCAATGGGAACAGTTACGGAGATGAGGAATGTTTTACAGTGCACGGAGAAATGAGGCAACACAGTCACGGCCCGTTCTACAACCCCCAAGACCCCCACAGAGGAACTCATCACATGGATCAGGATCAGAACCTCAGGCCGACCTCAGCCTACAGCACCGACTCCAGAATCAGCGTGCTGAACGCCCTGCCTTCAGACGAGCCCGTCACCATGATCTTCATGGGCTATCAGACTGCGGAGGGAGAAGGTACCGACAGCTACGAGGGCTCCGTCCGGGCCGAGCTCGTCGTCATCGGGGATGAAGAGGAAGGCCACAGTGCCCGTCCCCACCAGAGCCACCAGAACTGCAACGCCAACAACGCATCCCAGCACCAGCTCCAAGCCACAGGGGGCGCCAAAGCTACACAGAAGGGGAGCGGAAAAAAAACGAGGCCAGAGAGTCTAGGCCCTGCTGGAGTTCATTCCAGAGTGACCGGAGTGACCAGAGTGACCAGAAAGGCCACAGAAAAGGTCATGGAAGAAAATTACTGACCACAAGCTCATGAAGAACCACCAGCTGCAGCGTTCTAAAAGTGTCCGGCGGAAATCAATAAAGCAAGAAAGAATGAATAGAAGA

Function

GO: NA

KEGG:

id description
K16519 AKAP2; A-kinase anchor protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674501.1 True 1750 mRNA 0.53 11 3516624 3554178
XM_022674557.1 False 1685 mRNA 0.53 10 3516624 3554189

Neighbor

gene id symbol gene type direction distance location
LOC103028436 NA coding downstream 13331 3490872 ~ 3503293 (-)
LOC103033290 NA coding downstream 133502 3376610 ~ 3383122 (-)
olfml2b olfml2b,LOC107718167 coding downstream 200603 3297813 ~ 3316021 (-)
LOC103033918 LOC108431152,LOC106599103,LOC106568909,LOC108278312 coding downstream 299603 3189007 ~ 3217021 (-)
LOC111193343 prg4 coding downstream 337030 3163711 ~ 3179594 (-)
LOC103032017 LOC108441573,LOC107693752 coding upstream 49997 3604186 ~ 3666404 (-)
ap1s3 NA coding upstream 284680 3838869 ~ 3849326 (-)
serpine2 NA coding upstream 372911 3927100 ~ 3957131 (-)
LOC103026864 LOC107669897 coding upstream 415031 3969220 ~ 4005230 (-)
LOC111193700 NA coding upstream 480267 4034456 ~ 4037520 (-)
G1224 NA non-coding downstream 41760 3474189 ~ 3474864 (-)
G1214 NA non-coding downstream 130393 3385373 ~ 3386231 (-)
G1211 NA non-coding downstream 143009 3368803 ~ 3373615 (-)
G1013 NA non-coding downstream 218978 3296240 ~ 3297646 (-)
G1017 NA non-coding downstream 221842 3294576 ~ 3294782 (-)
G1238 NA non-coding upstream 24040 3578229 ~ 3585540 (-)
G1234 NA non-coding upstream 41554 3595743 ~ 3599731 (-)
G1247 NA non-coding upstream 64043 3618232 ~ 3650378 (-)
G1267 NA non-coding upstream 325375 3879564 ~ 3881731 (-)
G1290 NA non-coding upstream 451973 4006162 ~ 4009880 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other downstream 71238 3394204 ~ 3445386 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other downstream 546284 2910754 ~ 2970340 (-)
G807 NA other downstream 916113 2550216 ~ 2600511 (-)
znf414 NA other downstream 1082223 2423713 ~ 2434401 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other downstream 1588369 1920480 ~ 1928255 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other upstream 328181 3882370 ~ 3909671 (-)
G1308 NA other upstream 545576 4099765 ~ 4101566 (-)
LOC111193794 LOC108442858 other upstream 712812 4267001 ~ 4271970 (-)
LOC111193783 LOC108442858 other upstream 722720 4276909 ~ 4321340 (-)
LOC103031123 LOC108411357 other upstream 2149517 5703706 ~ 5721108 (-)

Expression


Co-expression Network