LOC103032017 (LOC108441573,LOC107693752)


Basic Information

Item Value
gene id LOC103032017
gene name LOC108441573,LOC107693752
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 3604186 ~ 3666404 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674646.1
cgtacAGAGTGTGTATGAGTCGGTGTTTGAGAGAGCGTCCAAGCTGCTGCCTCACGCGCACCGCTCCTTTCCGTCCCTCCTGGGTGCTGAAGAGGATGGGGAGGGAAGAGCCAGCCTAGAGGAGCCCCTGTTCATTTCCACCAGAGGGACCCTTCTGAAGGAGGGCTTTTTCCCCACCTCCTCTGCATCAAAAAGCACCTGGGGAGGCACCCGATCGCTCGGCATGGCTGCGAAGGAGAGACTCAAAAGCAAGATGAGCAAAGACAGCGTCACCCTGCTGCCCTGCTTCTACTTCGTGGAGctcccgaTCCTGGCCTCCTCTGTGGTCAGCCTTTACTTCCTGGAGCTGACGGACATCTTCAAGCCTGTGCACTCAGGCTACAGCTGCAACGACCGGACCCTGAGCATGCCCTACATAGAGCCCAACAAGGAGGTCATCCCGTTCCTCATGCTCTTCAGCCTCGCCTTTGCTGGACCAGCAGCTACGATTATGATTGGGGAGGGGATCCTCTACTGCTGCCTGGCCAAGAACCTCGCCATTAAAACCGAAGCCAACATAAACGCTGCCGGCTGCAATTTTAACTCCTATATTCGTCGGGCTGTAAGGTTTGTGGgcgtgCACATTTTTGGCCTGTGCATCACGGCCCTCATTACAGACATCATCCAGCTGTCCACAGGGTACCACGCTCCGTACTTCCTGACCGTGTGCAAGCCCAACTACACCACCCTCAACACCACCTGTGATGAAAACGCTTTCATTGTGGACGACATCTGTTCCGGATCTGACCCTACAGCCATCAATGCCGGCAGGAAGTCGTTTCCGTCTCAGCACGCCACCCTGGCTGCCTTCGCTGCTGTCTACATCTCTATGTATTTCAACGCTACACTGACCGACTCCTCCAAGCTACTGAAACCCCTGCTGGTCTTCTCCTTCATCATGTGTGGAGTCATCTGTGGCCTAACTCGCATTATCCAGTTTAAAAACCACGCCATCGACGTCTACTGCGGCTTCCTCATTGGAGGAGGCATCGCCATCTACCTGGGTCTGTATGCAGTAGGGAATTTCAAACCCAGTGAAGACACGTCTctccaccagcaccaccacAATCACCATCACCCACTCCATCACCTGCGCCCACCGCAACCTCACCAGCCTCAACCTCCACCCATGCAGCTACCAGCCCAGCCACAGCCCATCTGCCCCCCGCCAGCCCTCCGAGAGCCCCTGCGTACCCTGCCCAACCTCACCACGGACCACCCGCGCCTCCTACACGCCAAAAGCTACAGCGTGAGGGAGCGACCCACGTCGGCGCGCTCCGAGAGCATCCTGCTTCGCGGACCTCAGCGGCACAGCGACTCCCTCACCAGCCTGAAGAGAGCCAGCAATGAGGTGGAGTGCATAACACCCCCCAGCCCAATCTGCAAGGAGAGCCTGGTGACCTTTAGTAACACGCTGCCTCGCGTCCACTCCACAGCATCCTTGCAGACTGAGTTACCCTATTCTCAAAACTATCAAAATGGCTACCAGGTAAATAAGccTTTCCCCCAGGCTCCAGAAGAGCCCGTCTCCCGTCGTCACGCCGCCATCCACTCTTCAATGGACTCCACGCGATCCAAGCAGCTGCTCTCGCAATGGAAGAGCAAGAACGAGAACCGCAAGCTCTCTCTGCAGGCCATGGAGGTGGAGGCCGATCCGGGCCATTCGCCTCAGCGCTCTATGGAACTCCGCTGCAGCTCAGAACCTGCCGCTATGGGCATGGAGATGGGCGGCCCAGCCAGCCAGTACATGAAGCTGGCGGCTAGCTCTGTGCCACTGCCCAACCACAACCACAACGGAGGTGGTGGAATGGTGGGTGGAGCCAGAGTGTCCATGCAGTCGCGACCAGGTTCCTCTCAGCTGGTTCACATTCCGGAGGAGACACAAGAAAATGCCTGCTCTTCTCCGCAAGATGATAGTGGGGAGGCTAGCGATGGTGGAGGAGGGAACTCAGCTCGATCCAAGTGGATGAAAGTGGCTGAAAAGAGCACCGTCTGCAGGACTAACAGCCAGCCACGCATTATGCAGGTGATTGCCATGTCCAAGCAGCAAGGGATGTTGCACGGGAGCCCAAAGAGCGAGAGCAGCACCCTCAGCTGCACAGGATCCATCCGCTACAAGGCCCTGATGGACCAGGAGCCCAACGCAGGCATTGTGCACGTGGAAGCGCACCCAGAAAGCAGACCTATGGTAAAAATGGAAGGTGGTGGCTCCTGGCGGTGGAAGCCTCCTCAAGAGCGAGGCAGCATTCGCCAGTCCTTCGAGCTTAACGACCTTAACCGGGACTCGGAAAGCTGCGACTCCCTCAAAGACGGCTACGGCTCCGTCGACGGCAAGCAAAGCCTCCCGGACATGAGCAACCCCTCTCTTCATCATCCGCacttccaccaccaccaccacccgcACGCCCACCCGCAGGCCATCACCACAATCCGCGTGACGCCGGTGGAGACGAGCAGCGAGGCCGCCTCTGAGACGCTGTCCATCGCCTCCAGCCGAGACTCCACCCTCCAGCGGCGCAAAAACAACAGCGTCAGCGTCAACGTCTCCATGCTGCCCGACAGAGGACCCAGCCCAGACAACACCAGGAACCTGCCGCACTTTTTCAAACACTCCCCCACACCCCCTCCTACTGTGACCTTCAAAGAGTGAGCTCCGACTCTCTGAGtcttctttctttcccctcGTTTCCTGTTCCCGGAGTGGCCTTGCTCTACTGCTcacacttctctacagggacagATGGGAGCTAATACTGGATATCTCCATTGCCCTCCATTCTGACAGCCAGCTGGCTCTCTCTGACCCACGGAAGGCAGTTGTAAGGGGAGTTGTGcattttccctctcttttttacCATACTGTGACATTGAGAAGcacaaaaaaatgctttgttttttctctccatGTCCATGGTGGACTTTTTGCTTTTTCGTTTTGGCTTAATTCGACTGTGTTACGTTTTCACCACGATTATACAgtcaaagacattttttttggtcGACGATATTGTCTACACTACCtagacagtgttttttaaactcCCATCGTCCTTTACTAACAAACACGTGTGTTGCCTCAGACGACAACATGGCGGTGCTTTAGAAATACCATACACTTTCATACCATATATCCCAGTGtggaaatatacagtatatatatattttcctcagtgtaaatatatttgtaacagACCATATAGTTGGGCCTCTTTAGAGCATCACTGGCTGTTAATTATCCTTACAGCGTTGCTAGCAAGTACTATAGACGTGGCTTTTAGAAGGGTAAGGGGATGTAACTGTAAATTTACGTTTACACAGAGTAGAAGTGGAGTAGTGGATTTGCCAAACTTCAGAACAGATACTGTAGACTGTTGAACATGAAGGTGCTACAATGTGTTCTTTGAGTggtgccatagaagaaccaaaTTTTGATCTAGAGACAAGTATTCCATGTATGAgatctgcatgtgtgtgtagaaCCTTTAAAATGGGGGATGTCCTGAATCAATTCGGTAAGATGTGCTGTTAATGACAGCAgtgtaataaataatgttttttacttcacttctgtacttaagtactaaaataatgcTGTAtctatctactggagtattatttttactactttcattttttctttactacatattttccaTGAAGGAATCATTCCAAACCACATTATTACTAAATCCAGAGCGGTAGATGCTCTGCTCTGTCactgggtttgatgaagctgcttATCTTTGAGTGAACCaagagatcaagctgatcttacaAGAAGATCTCGCTGCTTCTGTTCTACCTCTGAGAACTTTCCaatgctttctgtaataactacactaataacacagtgctgtacttttactttcagtacttcagtactacattttacaataaactacttaCTGCAATACCTAAGTAC

Function

NR:

description
PREDICTED: phospholipid phosphatase-related protein type 4-like

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K19582 LPPR3_4; lipid phosphate phosphatase-related protein type 3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674646.1 True 3961 mRNA 0.52 11 3604186 3666404

Neighbor

gene id symbol gene type direction distance location
LOC103032346 NA coding downstream 49997 3516624 ~ 3554189 (-)
LOC103028436 NA coding downstream 100893 3490872 ~ 3503293 (-)
LOC103033290 NA coding downstream 221064 3376610 ~ 3383122 (-)
olfml2b olfml2b,LOC107718167 coding downstream 288165 3297813 ~ 3316021 (-)
LOC103033918 LOC108431152,LOC106599103,LOC106568909,LOC108278312 coding downstream 387165 3189007 ~ 3217021 (-)
ap1s3 NA coding upstream 172465 3838869 ~ 3849326 (-)
serpine2 NA coding upstream 260696 3927100 ~ 3957131 (-)
LOC103026864 LOC107669897 coding upstream 302816 3969220 ~ 4005230 (-)
LOC111193700 NA coding upstream 368052 4034456 ~ 4037520 (-)
LOC111193716 NA coding upstream 386083 4052487 ~ 4052783 (-)
G1234 NA non-coding downstream 4455 3595743 ~ 3599731 (-)
G1238 NA non-coding downstream 18646 3578229 ~ 3585540 (-)
G1224 NA non-coding downstream 129322 3474189 ~ 3474864 (-)
G1214 NA non-coding downstream 217955 3385373 ~ 3386231 (-)
G1211 NA non-coding downstream 230571 3368803 ~ 3373615 (-)
G1267 NA non-coding upstream 213160 3879564 ~ 3881731 (-)
G1290 NA non-coding upstream 339758 4006162 ~ 4009880 (-)
G1301 NA non-coding upstream 413133 4079537 ~ 4081783 (-)
G1323 NA non-coding upstream 490197 4156601 ~ 4156840 (-)
G1324 NA non-coding upstream 495075 4161479 ~ 4161873 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other downstream 158800 3394204 ~ 3445386 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other downstream 633846 2910754 ~ 2970340 (-)
G807 NA other downstream 1003675 2550216 ~ 2600511 (-)
znf414 NA other downstream 1169785 2423713 ~ 2434401 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other downstream 1675931 1920480 ~ 1928255 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other upstream 215966 3882370 ~ 3909671 (-)
G1308 NA other upstream 433361 4099765 ~ 4101566 (-)
LOC111193794 LOC108442858 other upstream 600597 4267001 ~ 4271970 (-)
LOC111193783 LOC108442858 other upstream 610505 4276909 ~ 4321340 (-)
LOC103031123 LOC108411357 other upstream 2037302 5703706 ~ 5721108 (-)

Expression


Co-expression Network