LOC103027148


Basic Information

Item Value
gene id LOC103027148
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 4214015 ~ 4220916 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675781.1
GCTAACACCTATGTGGAATGCTTGGCGTCCGATGCCGCTCCTGCTGCCAATGTCTCATGGGATCTTCCACAAGACCTGAATGTGGAGATACAGTCCGATGTTTCGTCATGCAACGGGACACACACTGTCCGCAGTGTCCTCACCCTGCCTGCCTGCTTCTTCCAGGAGACCACAGTCGAGTGTGTGGTTGAGCATTTAGACCTCCTGCAGCAGGAGAGGAGACCAGTCCATCTTCCCATCTGTGTTCCTGTAAACGTGACGCTGCAGAGCATGGTGGTGTGGGTGAACGGCATGGCGTATACCCAGGTCAACTGCAGTGCGGACAGCGTGCCCCCGGACTCCACTGTATTCTGGAATACAGAAAACTGCAGGATGGGCATCAACATGTCTGAACCCAGTGAGGTTCTGATCCAGTCTGGGACTCTgcagggtgatggtggtggggTCTGGAGCTCAGCTCGTCTCCCAGTTCACTCCTATGCTGGGTGCACTGTGGTCTGTGTGCTGGAGCATCACCGACCTGAGCGGAACAGTGTCCAACTTCCATCAGGAGGTCCCCCCTCGGTGGGTATGAAGGTCGGTCCGCTGAGAGACTCTGGGCTCTGGGCCGCTGTGTGTGAGTACCAGGGATTTGGGCTGGTACCGAACATCACCTGGATCATTTCTGACCACAACACTGCCGCCACCACCATCGTGCCCGTCACCCTCCAGCCTGTGTTCCAGGGCATCTCAGTGCTGGTCAACACCAGCTATAAGTTTGAGCTGAGTCAGCACGAGGGCAGGAACATCACCTGTCTGATTCGGGACCATTATGGGATGGAAGAAAGGAGAACTGTAAACATCCCAAAATACTTTATCTCCTCTATTGTGGTATTGAATGATACAAGTTTGTTGCGTGGGAACAGTGGGCATGTGTACAGAGTGGCGCTGCAGGAGGCCATCCCACAGCAGATCATCAGTTTCAGAGTGATGGGAAACACACCAGCCTTCAGTATCAGATGTTTCAGGGCTGATGGATCCGCTGCACACACTGGTTCCACAGCACTGGTGTTCGTCGAGCCGGTGTCAGAGTGGGACGCTGGTCTGTACACATGCCACGCCTCCTGGTATCACCACAAGGCCACTGTACTGGTCCAGGTGGAAGTTACCAGCCGGGAAACTCAAAAGATGACCTTCTTCCTCATCTGCTTCTCTTCCGCCACGGCCATCTCCCTCTTCCTGTTGGTCACTGTGTGCGTGCTCTGGTGAGTTCAGTGTGTGACTGAGCAGCTTTACAGCTGTTAAACACAAGGCTGGTGAGCTGCAGACAAAACAGGAAGTGAGGTAGAACACCTAGACAGGTAACGTGCCATGCTATTCATAAACAGGATGTTCCGTGGTTTAGAGAGGCTGGGTACACACACCGCACCAACCACAACTACGCTATTCTAAACCATTCTATACTGTTCAACACCACTCTACACCAGTCTTTACTATCCTACATCATTCTACACTATTCTACATTGTCCTGCAGCATTCTACACTATTCTACATTGTCCTACTTCATTTAACCGTATTGAACACTAGTCTACTCCCTTTTACACCATTCTACAGTATTCTGCACAATTCTACATCATCCTGCAGCATTCTACACTATTCTACATCGTCCTGCAGCATTCTACACTATTCTACATCGTCCTACTTcatttaacagtattttacatTGTCGCACCAACCACAGCTACGCTAT

Function

GO: NA

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675781.1 True 1729 mRNA 0.51 6 4214015 4220916

Neighbor

gene id symbol gene type direction distance location
dnhd1 NA coding downstream 6492 4149693 ~ 4207523 (-)
med29 med29 coding downstream 86789 4122118 ~ 4127226 (-)
LOC111193716 NA coding downstream 161232 4052487 ~ 4052783 (-)
LOC111193700 NA coding downstream 176495 4034456 ~ 4037520 (-)
LOC103026864 LOC107669897 coding downstream 208785 3969220 ~ 4005230 (-)
LOC103028190 LOC103028190 coding upstream 113932 4334848 ~ 4338794 (-)
LOC111192761 NA coding upstream 166331 4387247 ~ 4388980 (-)
LOC111192762 NA coding upstream 171030 4391946 ~ 4393659 (-)
LOC107197778 NA coding upstream 514122 4735038 ~ 4747924 (-)
irs1 irs1,LOC107577679 coding upstream 684825 4905741 ~ 4943017 (-)
G1324 NA non-coding downstream 52142 4161479 ~ 4161873 (-)
G1323 NA non-coding downstream 57175 4156601 ~ 4156840 (-)
G1301 NA non-coding downstream 132232 4079537 ~ 4081783 (-)
G1290 NA non-coding downstream 204135 4006162 ~ 4009880 (-)
G1267 NA non-coding downstream 332284 3879564 ~ 3881731 (-)
G1353 NA non-coding upstream 54922 4275838 ~ 4276794 (-)
G1363 NA non-coding upstream 133957 4354873 ~ 4355132 (-)
G1374 NA non-coding upstream 159682 4380598 ~ 4381126 (-)
G1385 NA non-coding upstream 425865 4646781 ~ 4655868 (-)
G1399 NA non-coding upstream 462318 4683234 ~ 4683540 (-)
G1308 NA other downstream 112449 4099765 ~ 4101566 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other downstream 304344 3882370 ~ 3909671 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other downstream 768629 3394204 ~ 3445386 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other downstream 1243675 2910754 ~ 2970340 (-)
G807 NA other downstream 1613504 2550216 ~ 2600511 (-)
LOC111193794 LOC108442858 other upstream 46085 4267001 ~ 4271970 (-)
LOC111193783 LOC108442858 other upstream 55993 4276909 ~ 4321340 (-)
LOC103031123 LOC108411357 other upstream 1482790 5703706 ~ 5721108 (-)
nlk nlk2,nlk,LOC107682651,LOC107666197,LOC106581270 other upstream 4732961 8953877 ~ 9092112 (-)
LOC103037880 LOC108432996 other upstream 4892563 9113479 ~ 9133571 (-)

Expression


Co-expression Network