LOC103024281


Basic Information

Item Value
gene id LOC103024281
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 8701197 ~ 8722610 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680008.1
TCCATTCAGATCAGTCATACTGGTTATGCAGGACATGGGTTAAACAGGAATGTACTGTAAAAGAGGCATTTAAAACCAATACAGCTAATGGTTTACCTGCTGCTTCAATCATTTACTAATGCTAGCTTTTTAAACTTGACCGGAAACACACGCAGATTTTGACActggatattattattatttttttttttggactattTACTTCATTTTGAATATGGGATCATTCCTAAGGAACCGCTGTTTGCTGTCTCTCCAGATCATTCCTTTTGTACTCGTCCATTTATGCTTCAGCCAGGAAGCATCCAGTTCAGTCAAGTTTTTAAACCCACCTGAGGTGCCGGAGTCAGTCTACCCTATGGAGGTCCAGTACTCCTGCAGTGGGCCCTTAATGGTTCATGTACAGGTTTTAGTGTCTTTTGATACTGGAAGCACTGTAACCATCTTCCACAGGTGGTGGCCCTGCTTACCTGGTCCAGACAGAATCAGACCTGTGTTACTTCATTTCCCAGACTGGCTGGTGTATCACCCAGATTGGATCATAGATCAGTCATCCTGGGTGCTGTCGTGTCTTTTACGTAGCTGGGTGGGCAGCAGTGCAAGTGTAGAACCTGGCCGGTCACCTTCGGCCAGTGCGGTGGTTGCCATGAACGTCCAGAATCCACTGAGCCGGCCTTTTAAACAGCACTTATTATGTCCCAGCTGGAACACAGAGATACGTTGGAAGGTGTTTGGAGATAGATGGCAGTGCCTAAAAGAAGATGAGACACCAAGTCTGCTGTCTTCATTATATGGATCCACTGGGGAGCATTTCGGCATCAccaaatctctccatccatttAGGAATGAAATGCTAGAAGGCCAGCGGATAAGGGCAGTTTCATATCCCTGGTGTGCCTTTACAGTCTGGGTTTTATTAGAGCAGCCATGCAGAGACCGTCTGTGTGGACTCTTCCATCATATAGACTCTAAAGAGAACTATGCCACACCTACTGTGTTCCTCACAAGATCAGGTCAGCTTCATGTGCAGTTACAAGGAGAGGGTGGTCTATCCTCAGCGTTTCTCTCTCCTTTCACTCTGCCTGTAGGCCTGTGGTGTCTTCTCACACTGGAGCTGAAGGGCAGAATGGGAAAAATCACAGTCTCCTGCACTGATGGAGATAAAGATCCTCTTGTTTACTCTTTCGAGCACATGTTTAATATAGCAGTGATGCTGGATGATACAGATGGCTACTTTGTGATTGGTGGAGGAAAATATGTAAGAGGAATTGAGGGCTTTTATGGTCCCGTCATATACCACCGCACAAGGATTCCTTCAACTAACCTGgTGCTTCAGCTCCCCTGGCCAGTAAGGATGGTGAATTTATCAGGATGGTTCGAGGCCTGTCAGGAGTTTAAACTAGAGGTTGATCACAAAATAGCTGATGCTTCACGAGCAGTGATGGTTAAAAGAGaGAGCTGTACAGATGTATACACCGCCCTGTTACTGAAAACCAATACAACATCCTCAAAAGCAGAATGTAGCTCCTTTCAGCCACTCAGCAAACCACAGAGACGAATGGTGGCtcagctggtcaggatgctaTCTGAAAAAAACGGCATGGTTGATCCAGAATCTGTGGGCCGAGCTCTGTATTCTGCTGTTCTGCGTAAGCTGAATGCACATGGCAGTGTGGAGGTGATGAACAGACTGATGCCCTCTCTCCTGCAAGCGGGATGCTTAGGAGACAACAGAGCACTCCATCTCTCTTCTGTTCTCTACAGCAGTGGACTTGGAGTTAAAAAGCAGCCCTATAAGGCCTGGCTGCTGTCACTACTGGCAGCTCGTAAGGATTATAGACTGGCTCTCCTCCGCCTGGGGCACCTGCACCATGTTGGGGACCAGACTGTACCTCCAGACCCTGACCTCTCCTACGCCTATTACTCCAACATCGCTAAGCAGACTTCAACAGATCGACTCAACCCCTCCTCACAACAGACTTTCGTTGAGTCAGTCTTACTGAACGATGAGGAAACACTGAATGCCCAAACCAACACAAACGACGATCTGTTTCACTGGCTGAAACTGCAGGCACGCAACGGAGTTGCAGACGCTGAGCAAGCCATAGCCCGGATGCTGTTCTGGGGGCAACAGGGGGTGACCTCAGATATCCAGACCGCTGTGAGGCACTATGAGAGGGGAGCTACAAGACTGCAGGACCCTGTGTCCATGTACGACTACGCTATCGTTCTACTCACGGGCCAAGGAGTTCCGAAGGATGTGCCCAGAGCCATCACCTTTCTgaaaaaagcaatagaacagGGCTTTACTCCAGCTATCACGGCTTTGGGCTGGTACTATGAGCAGTATGAGAGGAACTATAAGCGAGCAGCAGAGCTTTGGGAACAGGCTGATCACTTGGGGAATCCTGATGCTGCCATGAATTTAGGAGTACTCCATTCCCAAGGCCTCTATCCTGGACAAGCAGCAGACAAAGTTAAGGCTTATAAATACTTCTTAAAGTCAGCTCAGCGGGGCCACATAAACGGAGGCATTGAACTGGCTGAAATCTGGAGTCGAGGGATTTCTGGTTATGTGCCTCGCCGTCCATCTGATGCAGTTCTGTGGGTAAAATGGGCATCTGAGCAGAATGGATATCTTGGGACAGTCTTGAGGAAAGGCCTGAACGCTTATCTTCAGGGAAACTGGTTTATGGCCATGATTTATTACCTGATGTCGTCTGAGTGTGGATTCAAGGCTGCTCAGTTTAACGTGGCATTTCTGTGTGAGCACAGTCCTAGTGGATCCTTAAATTCATCATTTGTGACACAGTGTATGCTACAGTACTACAACCTCTCCATTCAGAGCCAGGATCCTGACTCTTACGCGCTGGTGAAAATGGGTGATCTGCTGTATGAGAAGCACACTGAGGGTCAAGGGGATCTTTCTGCTGCAGCTGAAATGTACAAAGAAGCAGCACTAAAAAACAACCCACAGGGTTGGTACAGTCTGGGTCTCCTTGTTCAGGAGGGACAGCGATTACCAGCCACTGTACTCTCTCAGCTTAATTTGCTGCAGCATTATTTTTCAGACAAGCACACACTTCTTACCACCCTGTACCAAAGATGCCGAGACTCCAGCAGTGATGAAGCACATCTTCCCTGTACTCTTGCTCTGCTTGCTACACATTTACAGTCCTTACAATCTTTTGGAAATTCGTCTATAAAGCTGCTGAGTGTTGTGGCTGTTGCTGTTGCTACTCTCTCGTTCTTCAAAATCATCCCAGTGATTCTCCGGCAGAGGTCAGCATCTGTTCAGCAGAACTCTGTCCCCTCTGAGGCAGAGCAGCCTACAGAGCAGGAGGAGTCTTCAGGGGTGTGAACAGCTCTTTATTGTCATTGATGCTCATTCTTTGAGCATCTTTCAACATTCTCAGGTGGACACACACAGAAATTACTTTAAAGTATGAGTAAAGTTAtgagagacttttttttttttacttttgctccTGGACTCCTCTACACTGTTGTGGAGTGTAATTCACTTTTACTCCACTGCAATCACAATTTAAGCACCCTTGTAGGACATTTCACTGCTTTTTACttgcatttttggacaagctaaGAGAAACAGAAGCAACTTTCGAAGTGTAGAGTAATATTAAATCAATTTGCACAAATATGACTCTGATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680008.1 True 3670 mRNA 0.47 23 8701197 8722610

Neighbor

gene id symbol gene type direction distance location
LOC103025735 robo2,LOC107741616 coding downstream 218969 7829843 ~ 8482228 (-)
dhx16 dhx16,LOC107704755 coding downstream 1520264 7165536 ~ 7180933 (-)
rnf225 NA coding downstream 1558287 7137056 ~ 7142910 (-)
LOC103038529 LOC108432985 coding downstream 1567586 7123071 ~ 7133611 (-)
LOC103037673 LOC108432984 coding downstream 1588948 7104292 ~ 7112249 (-)
LOC103023547 LOC108432992,LOC103353587,LOC100691215,LOC108277929,LOC102314497 coding upstream 3721 8726331 ~ 8787049 (-)
mrps23 NA coding upstream 134716 8857326 ~ 8862790 (-)
LOC103026958 nos2,LOC108432969 coding upstream 144711 8867321 ~ 8890459 (-)
LOC103031688 nos2,LOC108432969 coding upstream 189210 8911820 ~ 8933110 (-)
LOC103039097 serpinh1b,LOC103039097,LOC108433001,LOC108278262,LOC107588392,LOC107756564,LOC107666206 coding upstream 884306 9606916 ~ 9612718 (-)
G2329 NA non-coding downstream 70399 8629822 ~ 8630798 (-)
G2327 NA non-coding downstream 73294 8627692 ~ 8627903 (-)
G2324 NA non-coding downstream 77564 8623402 ~ 8623633 (-)
G2313 NA non-coding downstream 117206 8583783 ~ 8583991 (-)
G2301 NA non-coding downstream 143053 8557722 ~ 8558144 (-)
G2429 NA non-coding upstream 223730 8946340 ~ 8947236 (-)
G2447 NA non-coding upstream 491026 9213636 ~ 9213948 (-)
G2450 NA non-coding upstream 529474 9252084 ~ 9252292 (-)
G2451 NA non-coding upstream 556617 9279227 ~ 9279495 (-)
G2454 NA non-coding upstream 593076 9315686 ~ 9315890 (-)
LOC103031123 LOC108411357 other downstream 2980089 5703706 ~ 5721108 (-)
LOC111193783 LOC108442858 other downstream 4379857 4276909 ~ 4321340 (-)
LOC111193794 LOC108442858 other downstream 4429227 4267001 ~ 4271970 (-)
G1308 NA other downstream 4599631 4099765 ~ 4101566 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other downstream 4791526 3882370 ~ 3909671 (-)
nlk nlk2,nlk,LOC107682651,LOC107666197,LOC106581270 other upstream 231267 8953877 ~ 9092112 (-)
LOC103037880 LOC108432996 other upstream 390869 9113479 ~ 9133571 (-)
hspa13 hspa13,LOC107682527,LOC107666191,LOC107714176 other upstream 1024012 9746622 ~ 9755755 (-)
rap1gap2 rap1gap2 other upstream 1524855 10247465 ~ 10461860 (-)
G2783 NA other upstream 1859679 10582289 ~ 10582747 (-)

Expression


Co-expression Network