LOC111195496 (tekt1)


Basic Information

Item Value
gene id LOC111195496
gene name tekt1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 10509040 ~ 10512788 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682969.1
gttaacacattttattatccgacattgttgattatatcgactagTCATTGTAGCCCTACACGTAGGAAGGAACCTgctctgtcatcaccttgtaggcaactgtaagagctttgaatttaatacgagcagcaactggttGCCAACGTTATCCAGTGAATTAACAAAAGAATTTTAACGAGTGAAACATTCCAAACTCAGCAAATGACTGaatataaaatcaaaagctTTATCATTCAGCAGATGTCAGCCATGATATGTAAATGGAGTAGCAGGGTTATTGGGTCTTTGAAAATGGAAAAAGATGACAAAATTGTCCCTGTTTTGTCATGTCTTACTGGTCAAAAATGTGGTTTGTGAAAACTGCAGATCCACAGTCACCCCAGAAGAGTGGGAAAACTTCTCGGACATGAACATCAGGAAAGCTGAGAAAGAGAAGAACAACTCTCTGTCTCTGAGGGCGCTGGTGGAGAGTCTGCTGGAGCAGACGGCTGCGGACATGCAGCGGCAGCACAGAGCCACAGGCACTGCACTGGAGCTGCGCGTACACGAGACCAGGACTGCTAAAGACCAGCTAGAAGACCAGCTCAGCAAGCTGCTGGTGGAGATCGCGAGTCAGGAACAGAATCTGGAGGCTCTGAAAGTGGCTATTGCAGATAAAGAGAGTCCGCTGAAAGTGGCCCAGACCCGGCTGTACGCCCGCAGCCAGAGGCCCAGCATTGAACTCTGCCACGACCCCGTGCACACCCGCCTACTCTCTGAAGTGCAGGAGCTGGCAGACCACATCACAAGGTTAAAAGAAGCCCTTGCCCAATCAGAGATGGAGCTGAAAGCCCTGATCAGAAGCCAGCTGATTCTGGAGGAGGAGATTCAGATCAAAGCCCACTCCCTCTACATAGATGACGTGATCTGCACCCAGCTCCACCAGCCAATTACCATCCATCATTTCTGAACTAGAAACGAGGACAGCTTGAGTGTCAGTATTGTCCTATCATCAATAAAATTTCAAGGTTGGAAATACATCATTGCATGAATGGAA

Function

symbol description
tekt1 Acts upstream of or within cilium assembly. Predicted to be located in motile cilium. Predicted to be active in microtubule cytoskeleton. Is expressed in Kupffer's vesicle; forerunner cell group; nervous system; otic vesicle; and pleuroperitoneal region. Used to study ciliopathy. Orthologous to human TEKT1 (tektin 1).

NR:

description
PREDICTED: tektin-1

GO:

id name namespace
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0005874 microtubule cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682969.1 True 1036 mRNA 0.47 3 10509040 10512788

Neighbor

gene id symbol gene type direction distance location
LOC103040855 NA coding downstream 689131 9817662 ~ 9819909 (-)
LOC103040551 NA coding downstream 694342 9812342 ~ 9814698 (-)
LOC103040232 samsn1 coding downstream 706360 9766040 ~ 9802680 (-)
LOC103039097 serpinh1b,LOC103039097,LOC108433001,LOC108278262,LOC107588392,LOC107756564,LOC107666206 coding downstream 896322 9606916 ~ 9612718 (-)
LOC103031688 nos2,LOC108432969 coding downstream 1575930 8911820 ~ 8933110 (-)
LOC111195508 NA coding upstream 240316 10753104 ~ 10756886 (-)
LOC103043674 dhr13,LOC108427000,LOC107685074,LOC107589701,LOC107756995 coding upstream 559610 11072398 ~ 11076365 (-)
LOC103042223 cryba1a,LOC103042223,LOC108426912,LOC107743738,LOC108278232,LOC105898204 coding upstream 568060 11080848 ~ 11083883 (-)
foxn1 foxn1 coding upstream 608019 11120807 ~ 11135302 (-)
lrrc72 NA coding upstream 791802 11304590 ~ 11308672 (-)
G2761 NA non-coding downstream 9768 10421862 ~ 10499272 (-)
G2733 NA non-coding downstream 211427 10296743 ~ 10297613 (-)
G2731 NA non-coding downstream 220358 10275904 ~ 10288682 (-)
G2712 NA non-coding downstream 224640 10198147 ~ 10284400 (-)
G2730 NA non-coding downstream 236515 10271530 ~ 10272525 (-)
G2793 NA non-coding upstream 134130 10646918 ~ 10647124 (-)
G2835 NA non-coding upstream 270360 10783148 ~ 10783487 (-)
G2837 NA non-coding upstream 271016 10783804 ~ 10784140 (-)
G2857 NA non-coding upstream 485064 10997852 ~ 10998080 (-)
G2865 NA non-coding upstream 558245 11071033 ~ 11071239 (-)
rap1gap2 rap1gap2 other downstream 47180 10247465 ~ 10461860 (-)
hspa13 hspa13,LOC107682527,LOC107666191,LOC107714176 other downstream 753285 9746622 ~ 9755755 (-)
LOC103037880 LOC108432996 other downstream 1375469 9113479 ~ 9133571 (-)
nlk nlk2,nlk,LOC107682651,LOC107666197,LOC106581270 other downstream 1416928 8953877 ~ 9092112 (-)
LOC103031123 LOC108411357 other downstream 4787932 5703706 ~ 5721108 (-)
G2783 NA other upstream 69501 10582289 ~ 10582747 (-)
LOC103025442 lhx1a,LOC108427001,LOC108277614,LOC107743643,LOC105897175,LOC107669762,LOC107589700 other upstream 142070 10654858 ~ 10684465 (-)
sarm1 sarm1,LOC107669752,LOC107743642,LOC107756984,LOC107685076 other upstream 768421 11281209 ~ 11293882 (-)
LOC111192956 LOC108412924,LOC108444125,LOC108444119,LOC108416439 other upstream 1411214 11924002 ~ 11940744 (-)
G3297 sacs,LOC107593479,LOC107740366,LOC107670382 other upstream 2227356 12740144 ~ 12758513 (-)

Expression


Co-expression Network