foxn1 (foxn1)


Basic Information

Item Value
gene id foxn1
gene name foxn1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11120807 ~ 11135302 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683325.1
AGTGCTGGGGATTGATGTCTACTGAGTCTTTTCCATTTGTGGTCAGCAGCAGCCCACCCAAGAGCTTTCAAAGTGCCCTGCTGGTGAACCCCTGCCTACAAATGCCACTGTCCCAGTGTCCCAAGCCCAGCATTGCAGAAGACTCTGTCTGTAGCTCTCAGAGAGACAGCGCCACCTACATGTTAAAGAGCGGTCCTGCAGAGCGTTTCCGCAGGCACAGTGTGGATGGGAGCTCTTTGAGTCAAGAATCTGACTCTGGCAAAGACAAGCGCTTCCACCCTTACAGCAGGCAGTACAGCGATGGAGCTGCCACTGGGGCTGGAGGAGCCTACTGCTGCCTCGGAGAGTGCCAGCTGACTGATTCAGTCTCTCCAGCTCTCAGCAACACAAAGGAAGTAGAAGAACATAATGCCTGGACCCCCCTCAGCAACAGTGTACAGTCCTCCATCTTTATGggagcagagcagagtCCTGTTGAGATGCAAACCAGGCCTGAAGAGCCGCCCAGCTATTCATCGTCCACCCACCATGCATACAGCACCCTCCATCAAGCGTTTTCAGGTGAATACCCATCTGGAGGACTAGTGGGCAGCTCGCACTTCTCCTACCAAAGCCTTTCCTCTCAAACCAGTCAAGAAAGTCCAGCGCAGACCCTCTACCCTAAACCCATCTACTCCTATAGTATTCTCATTTTCATGGCTCTGAGGAACAGCAGAACTGGCAGCCTGCCAGTGAGTGAAATCTACAGCTTCATGACGGAGCATTTTCCATACTTCAAGACAGCACCTGATGGCTGGAAGAATTCTGTCCGCCACAACCTCTCCCTTAACAAGTGCTTTGAGAAAGTAGAGAACAAGAATGGGAATTCATCTCGAAAGGGCTGCCTGTGGGCTTTAAACCCAGCCAAGGTGGAGAAGATGCAGGAGGAGCTGCATAAGTGGAGGAGGAAAGATCCAGTGACGGTGCGCAGGAGCATGGCCAGACCAGAAGAGCTGGATCATCTTCTCGGAGAGAGACCAGAGAAGCAGAAGTCCCTTTCTTCTCACCTCAAcaaccacacatacccacaGTTCCCCAGAGTCACCATGCCTCCCTCCTATAGCCCTGGGATTCACCTCAGGAAACCCCAGTACACCCACTACAGCTTACCTACACAAGCTGTCCCACAGCACCCCTACCTGCCCTCCAACCCCCATGCCTTCTCCTTCTACCCCAGCATCAGCCAGCAGCCCAGCACACAGCTCCCCTCAAGAACAGGCAACCTGGATTCTCCTTTACCTGCACACACCCCACCCAGCTACAGCGCCGCTCTGCAGGCCAGCCACAGCGCTGCGGGCAGCATGCAGGAACTACTAATGGAGGCGGAGCTGAGCAATGACATTGACACGCTCAACCCCAGTCTAACAGATCTGCAGCTTCAGGGTCATCTTTGGGAGGAGCTGAGAGACGACAGCTTGGCCCCAGACTCACTGGTGATCATGGACACATCCACCTCCCCCGGCCAGATCAGCCCCAGCCAGGCTGGGGATTGTGTGGGCGTCTGTGGCTCAGGCAGTGGGGAGGTGAGCACAGCTGGGTCAGAAACAGGCCTGCAACTCACCGGACTCTACTCACCCAGTTTCAGCAGGGCAGACAGCATGACATGCCTCCACTCCACCTCAACAAACACTCCAATCTCATTGCTTTGAAGTAACATCTACCCTAGGCTGTCATCTACCTTGTACCTGCAaatagtggccactttattaggtatgCCTACTATATACAGGTGCGTCTCAATAAAagagaatatcattgaaaagttttgtcatttcagtaatttagtttaaaatgtgaaaatctctctctctatatat

Function

symbol description
foxn1 Enables transcription cis-regulatory region binding activity. Acts upstream of or within thymus development. Predicted to be located in nucleus. Is expressed in pharyngeal arch; pharyngeal arch 3-7 skeleton; thymic epithelium; thymus; and thymus primordium. Human ortholog(s) of this gene implicated in T-cell immunodeficiency, congenital alopecia, and nail dystrophy; alopecia; nail disease; and primary immunodeficiency disease. Orthologous to human FOXN1 (forkhead box N1).

NR:

description
PREDICTED: forkhead box protein N1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048538 thymus development biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09407 FOXN; forkhead box protein N

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683325.1 True 1856 mRNA 0.53 8 11120807 11135302

Neighbor

gene id symbol gene type direction distance location
LOC103042223 cryba1a,LOC103042223,LOC108426912,LOC107743738,LOC108278232,LOC105898204 coding downstream 36924 11080848 ~ 11083883 (-)
LOC103043674 dhr13,LOC108427000,LOC107685074,LOC107589701,LOC107756995 coding downstream 44442 11072398 ~ 11076365 (-)
LOC111195508 NA coding downstream 363921 10753104 ~ 10756886 (-)
LOC111195496 tekt1 coding downstream 608019 10509040 ~ 10512788 (-)
LOC103040855 NA coding downstream 1300898 9817662 ~ 9819909 (-)
lrrc72 NA coding upstream 169288 11304590 ~ 11308672 (-)
arl4a arl4a,arl4aa coding upstream 574323 11709625 ~ 11713271 (-)
LOC103024995 NA coding upstream 578819 11714121 ~ 11726198 (-)
LOC103030898 LOC108426917,LOC107588234,LOC106582211,LOC107752288,LOC107683449 coding upstream 632253 11767555 ~ 11777303 (-)
tmem106b tmem106b coding upstream 642276 11777578 ~ 11787142 (-)
G2888 NA non-coding downstream 2844 11116380 ~ 11117963 (-)
G2881 unc119,LOC103043060 non-coding downstream 8001 11092170 ~ 11112806 (-)
G2865 NA non-coding downstream 49568 11071033 ~ 11071239 (-)
G2857 NA non-coding downstream 122727 10997852 ~ 10998080 (-)
G2837 NA non-coding downstream 336667 10783804 ~ 10784140 (-)
G2897 NA non-coding upstream 26525 11161827 ~ 11162073 (-)
G3010 NA non-coding upstream 289332 11424634 ~ 11425258 (-)
G3013 NA non-coding upstream 327358 11462660 ~ 11466549 (-)
G3055 NA non-coding upstream 596213 11731515 ~ 11754015 (-)
G3062 NA non-coding upstream 619993 11755295 ~ 11760809 (-)
LOC103025442 lhx1a,LOC108427001,LOC108277614,LOC107743643,LOC105897175,LOC107669762,LOC107589700 other downstream 436342 10654858 ~ 10684465 (-)
G2783 NA other downstream 538060 10582289 ~ 10582747 (-)
rap1gap2 rap1gap2 other downstream 658947 10247465 ~ 10461860 (-)
hspa13 hspa13,LOC107682527,LOC107666191,LOC107714176 other downstream 1365052 9746622 ~ 9755755 (-)
LOC103037880 LOC108432996 other downstream 1987236 9113479 ~ 9133571 (-)
sarm1 sarm1,LOC107669752,LOC107743642,LOC107756984,LOC107685076 other upstream 145907 11281209 ~ 11293882 (-)
LOC111192956 LOC108412924,LOC108444125,LOC108444119,LOC108416439 other upstream 788700 11924002 ~ 11940744 (-)
G3297 sacs,LOC107593479,LOC107740366,LOC107670382 other upstream 1604842 12740144 ~ 12758513 (-)
sgcg sgcg other upstream 1623764 12759066 ~ 12781165 (-)
LOC111197384 NA other upstream 1994910 13130212 ~ 13135641 (-)

Expression


Co-expression Network