LOC111190296


Basic Information

Item Value
gene id LOC111190296
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 14281032 ~ 14318897 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002649055.1
GAGACACCTGCTCAGCCAGCGACAGAGGATGAGACTCACACAGCCAGAGCTTGGCCTTGAACCTGAGAATACAAGGAAAACAAGAAGGTACCTCAGGCCCCCCTGCCCCAGGACACTCCTTGGTCTCTACCTAGACCAGAAATATCTGTATGGCTCACACACTACCATTCCTACAGGAACTAGGCGTGAAGGCAGTACCTTGGCTTCGTACCCATTCACCACCTCCGTTTTCTCACTGCGCCAGCCAAGAATACCCGTCTTGTTCCTGCAGAGAGAGGCAGATGCATTAACATGGGGCTGAAGACCTGCAGACAGAGgtgAAATTCCCTACCAGATTAATGCATCACTCAACTTCATCTTCACATTTAAGGAGGCTGTGTCTAAAACTGGAACTAGTTGACTTGATGCCTTGCTGTCCATGCCATCTCAGAACGGACCATTGAGATAAAGATTTCTGTAACTGAGGCAACAAAATGTGCAGAAATTCCCATGGTATCAACAGCTCACTGCTAGATaggttttttaaatgtatttttatttttcatatctTTTATGCTAAATAACATAGGATGTTTGTAGATACTAGTACAATTAATGTACAAAAAGAACACTATTATTGGATATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002649055.1 True 626 lncRNA 0.44 4 14281032 14318897

Neighbor

gene id symbol gene type direction distance location
git1 git1,LOC107685085,LOC107669736,LOC107548582,LOC105889552,LOC106580798 coding downstream 1742 14255315 ~ 14279290 (-)
LOC103035060 LOC108440363 coding downstream 112094 14138449 ~ 14168938 (-)
LOC103025751 LOC108427003,LOC107730853,LOC107582235,LOC107683286,LOC108277959 coding downstream 530753 13734473 ~ 13750279 (-)
LOC103043894 LOC108426997,LOC107589740 coding downstream 567657 13703983 ~ 13713375 (-)
myo1c myo1c,LOC107756890,LOC107743634 coding downstream 622108 13591095 ~ 13658924 (-)
LOC103037230 ssh2,LOC108440358 coding upstream 12908 14331805 ~ 14364469 (-)
blmh blmh,LOC107743628 coding upstream 95357 14414254 ~ 14435382 (-)
LOC103039849 cd3eap coding upstream 199038 14517935 ~ 14520858 (-)
LOC103040167 gpr4,LOC108278409,LOC107743733,LOC107669721,LOC107548551 coding upstream 221510 14540407 ~ 14577509 (-)
LOC103040481 eml2,LOC108277999,LOC107685092,LOC107669753 coding upstream 274128 14593025 ~ 14630713 (-)
G3610 NA non-coding downstream 33173 14247642 ~ 14247859 (-)
G3469 NA non-coding downstream 560007 13680519 ~ 13721025 (-)
G3474 NA non-coding downstream 589150 13689761 ~ 13691882 (-)
G3459 prpf8 non-coding downstream 606460 13674108 ~ 13674572 (-)
LOC111197623 NA non-coding downstream 896085 13381254 ~ 13384947 (-)
G3621 NA non-coding upstream 43103 14362000 ~ 14363072 (-)
LOC107197060 NA non-coding upstream 50316 14369213 ~ 14371084 (-)
LOC111190767 NA non-coding upstream 118774 14437671 ~ 14513968 (-)
G3631 NA non-coding upstream 155188 14474085 ~ 14475176 (-)
G3668 NA non-coding upstream 214846 14533743 ~ 14790620 (-)
LOC111189390 NA other downstream 147795 14124173 ~ 14133237 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other downstream 708660 13544500 ~ 13572372 (-)
LOC111197384 NA other downstream 1145391 13130212 ~ 13135641 (-)
sgcg sgcg other downstream 1499867 12759066 ~ 12781165 (-)
G3297 sacs,LOC107593479,LOC107740366,LOC107670382 other downstream 1522519 12740144 ~ 12758513 (-)
slc6a4 slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 other upstream 61858 14380755 ~ 14471752 (-)
LOC103022652 LOC103022652,LOC108425821,LOC108277503 other upstream 1959108 16278005 ~ 16282632 (-)
ercc2 ercc2,LOC107743694,LOC107601732 other upstream 2325595 16644492 ~ 16653968 (-)
LOC103040336 mpzl2 other upstream 3664988 17983885 ~ 17998749 (-)
G4621 NA other upstream 3711465 18030362 ~ 18040766 (-)

Expression


Co-expression Network