Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC111192371 |
| gene name | NA |
| gene type | non-coding |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035897.1 |
| NCBI id | CM008300.1 |
| chromosome length | 26953843 |
| location | 18030997 ~ 18034451 (-) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016064 | immunoglobulin mediated immune response | biological_process |
| GO:0002250 | adaptive immune response | biological_process |
| GO:0002252 | immune effector process | biological_process |
| GO:0002253 | activation of immune response | biological_process |
| GO:0072376 | protein activation cascade | biological_process |
| GO:0006956 | complement activation | biological_process |
| GO:0006958 | complement activation, classical pathway | biological_process |
| GO:0006959 | humoral immune response | biological_process |
| GO:0048583 | regulation of response to stimulus | biological_process |
| GO:0002376 | immune system process | biological_process |
| GO:0002684 | positive regulation of immune system process | biological_process |
| GO:0050776 | regulation of immune response | biological_process |
| GO:0050778 | positive regulation of immune response | biological_process |
| GO:0002443 | leukocyte mediated immunity | biological_process |
| GO:0002449 | lymphocyte mediated immunity | biological_process |
| GO:0002455 | humoral immune response mediated by circulating immunoglobulin | biological_process |
| GO:0002460 | adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains | biological_process |
| GO:0019724 | B cell mediated immunity | biological_process |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_002649872.1 | True | 477 | lncRNA | 0.40 | 3 | 18030997 | 18034451 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| mpzl3 | NA | coding | downstream | 55115 | 17945074 ~ 17975882 (-) |
| LOC103041159 | NA | coding | downstream | 116869 | 17882776 ~ 17914128 (-) |
| zc3h4 | zc3h4,LOC107683834,LOC107601737,LOC107690443,LOC107718283,LOC107585556 | coding | downstream | 1344813 | 16674101 ~ 16686184 (-) |
| LOC103043199 | NA | coding | downstream | 1372317 | 16656235 ~ 16658680 (-) |
| LOC103044128 | ckm,ckmb,LOC107690449,LOC107718278,LOC107601735 | coding | downstream | 1408013 | 16619111 ~ 16622984 (-) |
| LOC103039101 | tmem25 | coding | upstream | 13086 | 18047537 ~ 18060269 (-) |
| sik3 | sik3 | coding | upstream | 33428 | 18067879 ~ 18118621 (-) |
| LOC107196958 | NA | coding | upstream | 141323 | 18175774 ~ 18181003 (-) |
| cep164 | cep164 | coding | upstream | 153395 | 18187846 ~ 18202965 (-) |
| LOC103030909 | LOC108443025 | coding | upstream | 169594 | 18204045 ~ 18210644 (-) |
| G4513 | NA | non-coding | downstream | 21813 | 18004091 ~ 18009184 (-) |
| G4499 | NA | non-coding | downstream | 179554 | 17847759 ~ 17851443 (-) |
| G4480 | NA | non-coding | downstream | 663760 | 17366847 ~ 17367237 (-) |
| G4479 | NA | non-coding | downstream | 668761 | 17361813 ~ 17362236 (-) |
| G4478 | NA | non-coding | downstream | 692729 | 17338051 ~ 17338268 (-) |
| LOC111192372 | NA | non-coding | upstream | 21 | 18034472 ~ 18040751 (-) |
| G4619 | NA | non-coding | upstream | 28710 | 18063161 ~ 18066938 (-) |
| G4638 | NA | non-coding | upstream | 96390 | 18130841 ~ 18132384 (-) |
| G4644 | NA | non-coding | upstream | 122756 | 18157207 ~ 18158131 (-) |
| LOC111192376 | NA | non-coding | upstream | 136309 | 18170760 ~ 18173336 (-) |
| LOC103040336 | mpzl2 | other | downstream | 32248 | 17983885 ~ 17998749 (-) |
| ercc2 | ercc2,LOC107743694,LOC107601732 | other | downstream | 1377029 | 16644492 ~ 16653968 (-) |
| LOC103022652 | LOC103022652,LOC108425821,LOC108277503 | other | downstream | 1748365 | 16278005 ~ 16282632 (-) |
| slc6a4 | slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 | other | downstream | 3559245 | 14380755 ~ 14471752 (-) |
| G3612 | NA | other | downstream | 3746772 | 14283623 ~ 14284225 (-) |
| LOC103031959 | NA | other | upstream | 162129 | 18196580 ~ 18226004 (-) |
| LOC103038769 | NA | other | upstream | 1604914 | 19639365 ~ 19648822 (-) |
| LOC103038464 | NA | other | upstream | 1618335 | 19652786 ~ 19655913 (-) |
| LOC111192876 | NA | other | upstream | 2452143 | 20486594 ~ 20492524 (-) |
| G5095 | eif4g1 | other | upstream | 2595774 | 20630225 ~ 20637068 (-) |
