LOC103042328 (fam46ab,LOC108443474,LOC107664225,LOC107714964,LOC107751838,LOC107572161)


Basic Information

Item Value
gene id LOC103042328
gene name fam46ab,LOC108443474,LOC107664225,LOC107714964,LOC107751838,LOC107572161
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 27985090 ~ 27997357 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237438.3
GTTTACAGAGCAGCAGGCGGCGCGTGGAGGGCGGTGCGtaaagagagaacagagagagagagagagagagagagagagagatacagacagagggTTCTCCACACCCCTGCAGCAACTGAACGCAGCGCCACTGGAAGACACCGCGCACATTAACACACGTTATGCAGCCGCTCGCGGACTTCGAGTGAATCCTCGCGGCCCCCCCGGGAGGGAGAGTCGCGAGACCTCGCAGTACCCGTGCCCGCGCGAGCTCAGCGAGCGACCCCCGACAGCGTCTTCATCATGTAAACAAAGCCAGAATGTCTCACCGCCTAACGCGCACGCCCTCGCCGCCTGTCCCCGTGCGCGCCCCCGGTTCAGTTCCTCAGGCCATGCACACGGAGCCCCGTTCTTGAAGCCGTAGCGCGCGAGGGATGGCGAGCGAAGCGACGACGGAGGGCGCGAGGGCGGAGGAGGCGCGCGGCAGCCTGAGCGTGCTGAGCTGGGAGCAGGTGCAGCGGCTGGACGCGCTGCTCGCCGAGTCCATCCCCATCCACGGGCGCTGGAACTTCCCCACGCTGCACATGAAGCCGCGCGACATCGTGAGGGTGGTGCGCGCGCGACTGCGCGAGCGGCACATCGACGTGCGCGAGGTGCGCCTGAACGGCTCCGCCGCGAGCCACGTGCTGCACGAGGACAGCGGGCTCGGCTACAAGGATCTGGACCTGATCTTCCGCGCGGACCTGAAGGGCGAGCGCGAGTTCCAGACGGTGAAGGAGATCGTGCTGCACTCGCTGCTGGACTTCCTGCCCGCGGGCGTCAACAAGGAGAAGATCACGCCGCTAACGCTCAagGAGGCGTACGTCCAGAAGATGGTGAAGGTGTATAATGACTCAGACCGCTGGAGCCTCATCTCTCTGTCCAACAACAGCGGGAAGAACGTAGAGCTGAAGTTCGTGGATTCGCTCCGGCGGCAGTTTGAGTTCAGCGTGGACTCCTTTCAGATTCGGCTGGACTCTCTGCTGCTCTTCTACGAATGCTCAGAGAACCCCATGGCCGAGACCTTCCACCCGTCCATCGTTGGCGAGAGCGTGTACGGTGACTTCGAGGAGGCGCTGGAGCACCTGCGGCACAGGCTCATTTGCACGCGCAACCCAGAGGAGATCCGCGGTGGTGGCCTGCTAAAGTACTGCCACCTGTTGGTGCGGGGCTTTCGTGCCGCCTCACCATCGCACATGAAGCAGCTGGAGCGCTACATGTGCTCACGCTTCTTCATCGACTTTCCCGACGCTTCAGAGCAGCGGCGCAAGCTGGAGTCCTACCTGCAGAACCACTTTGTGGGCCTGGAGGACCGCAAGTACGAATATCTGAGCACACTGCATGGCGTGGTCAGTGAGAGCACCGTGTGCCTGATGGGCCACGAGCGACGCCAGGCCCTCAGCCTCATCACCATGCTGGCTGTGCGTGTGCTGGCTGAGCAGAACGTCATCCCCAATGTGGCCAACGTCACCTGCTATTACCAGCCGGCACCATACGTCGCAGACGGCAACTTCAGTAATTACTACGTAGCACAGGTGCAGCCGGTTTACGCCTGCCAGCCCCCAAATACCTTCTGCCCGTGGCTGCCCTGCAACTGAGACTGTTGTGGGACATGCTGGCAGTCTGAAAGAAGTGctcaaatgctaatgctaactggtCAGTGTAATTTGTGAAATTTGTTACAAGGCTATGTAAGCTAGAAGAGAGGCAACAAGTAGCTTAATATTTCAGCAAACAGCAGTTAAATGGAGCAATCCTATCTGAAATGGACTtgaggtgtagtgaaacatgataatgagtacaaaaACTTGGCCAATAGCTGACCTCCGTTCTCCCCCAGCATtacaaaatacagcacttttgaCAATGCTAGAGATCGGGCATAGCACTGCCCATGCAATGAAATcgctatttttaaaacattaactaGCTCAAATTAGCCTTATGTTAAATTACAATAAGTTAGAACAATAAGAGGAATAAGCATAAACGAATAGGTAGGACAGGGGAAAAGATTGCAAAATGAATTATATGAAATGCATGAataatatagagatattttcagcaacatctggaattcatgcatttacaTGAATTGTTAATCGTGTGAAAATGGTGATTTCTTTCCATGGGTAAAACTATGCCCCCAATTACTAGCATTATGAGCCTGTTgtgagcatcggctaaaagcttTGTATTTAGGAATGCTTGTGGTAAATGGTGGTGAGCTATTCGACTAAAGTTCATCCTCgtcatcatgtttcactacatcccatcatgtttattttactccttTAAGCCCCTCCCATGCAGGCACAGTACTAAGCTttggaaaaaacacacatatttaagtgtaaatttaaatggcatttatttttttaaatttttttacacCAAGAACATTAACAGGTACAATGTACCCTTTAATCAGAGTTGCCCAAACCTTTGCATTAAATttgcattacattttaaagcacAGTAACAAAAACAGCCTAGCCAAAGATAAAGGGTGGTTTTGCACAAATTAATTACTTatacatgtatatttttaagaaatataaacaaatcaACAAGTGGATCTCAGGGAGAAAAATTGAATGCATACAAAAACATATTACATAGGCcctttataaacattaaaaccTACAACATCACTACCCAAAGAAGCATTTGGGCAGTTCTTTTTTACTACCAGGCATGTCACCCAGGGCAGCAGAATGGATCAACCAGAGTACCTGACATTTGGTTTTGCCTATTTGATGGCAGAtgattacatttcttttttgcatGGCATTGAAAGTGTGGAGGAGAAGTCAGAACCATACTGCTCTTGTCGATGACTTGCTTTACGCAAGAGCAGGATGGAGGTCATTTGGCCTCGTTTCCAAAGGAAGTCATGTTGTGTCCAGGTGGTCCGAGGCATTCTGCCAAACCTGAAGAAACCCCACGCAGGCTTTTAGGCCACAAcatgacacacacagacaggagTCCAGACCACCAGTCTATTCTGTGACCCCTGTGAGtgggagaagaaagagagagctagtTCTCAAACTTtgtagtttatttctttgtgtGGTTTAAGACCTGTACAGAGACTTGAAGCAGAGATGTACAAATACGTAAAGACTTGTCCCCATGTAGGTCGATGTGAAGACAGGCGGGACAGACGATGATCAGCAGACACTCAGTCACTCAGAGACTCATTCAAACCAGCAGGGACGAAATAAACTGTTTACAAAACCAAAGATATTTTTTGTAGACATCAGCTAGCCACAAAAAAGTGTATCCAAGTGCCTGCAACAGATCAAATGCAACAAAGAGTTACAGAGCAAGACCCCCATCCAAATCCAAGGGGGGGGGTATTGCCCTGGACACAGTGGAGGGactcattttagtgtgtgtttatgtgtgtgggtgggtgtggctTCCTGTTCTTCTGTAGGTAATACATGGCAAAAGGCTCTGTGCACATTATCTTAACAGTTAGGGTGTAAATATCTGACATCATAAGGCTGGCTTTTAAAGGGCCTGTATCATGCAAAccaagatataaaaaaacaaaagcttgaCATTGTATGTAAAAATTACCTCCTTCAAACTGTATACGCAAAATTTTGGTTCTTAAACAGCTGGTTTTAAATGTACTGCTTTTGTGGAGTCGCAACAGGTAGTGCATTTGCATATCTCCATCTTACAGGCACTGTAACCGACAGTGAGGACGGAAGAAGTTTTTTATATAAGACAAATGCCATCTGGTATCATTAAAGGGTGTTTTTACATGGGAATTTTTAGTCAGGTTAAACTGGACcgtggtttgtttttttaaccatgGTAATTTGGCAGGTGTGAATACACCAAAACAACCACATCAAGACCCATGAGAAGGAGTGGTCTCAAACAAACTATGCagtggtggtaaattacccaaCCTCAATTTAACCCAATTATGAAATATACTCCTcatgtttgagaaaaaaaatccataaaatgtaaatgtttataatgGGCTAAGTGGCTCTTGAGGTGCAGTTTAACTGATTTATTAGTCAGATAATTACAACAGCAATTAACAGGttaaactgtacagaaataCGCACTAGTCTGGAACACAAAAcatttctttctgtatttactctCTTGTCCTTGCCACAGACAGTTCGGACCAATAAGTGGAAACAACGTCTTTATATGGTATGTTGTGATGCATTTTGGTTTccttgtgtgaaaccaaaccagggcaaaaaaaaaactttaagttAACAAGCatgttaaatgaaattaaaccagagaaatacactgtaggtgtgaaaacaccattTGATAAGTGTGGTGTAGTTGCAATGTAAACATTGTTTGAGAGCCGgaatcttttaaaatgtttcaatttTCATTGTTTCTGAGATGTCAGAACAACCAAGACAAATACACACATGCTTATACACAGCCAGTGGACCTTTAATGGtccttaaatgttttatgaagATTTCTAATGACTTTATGTTTTAACAATCACAGGTCGCATCCAAAAACTGATGCTAACGTTAATGCATAATAGTTTGGTTTAGCTGGTAAACAAAGGAATGTATTAGGAATGTCTTGGTGTGTAAAGCCAGCCTTATGATTGCATGACGACAGTACACCCTTTGATTCAGTGAACCATGAAGTGAAATAATTCACGGCATCATCAGAGTTTCAGATTCAGTTGTATTGTATTGAGTCATGGTTGTGAgtcattactgaaaaaaacagatgcagcTGCAGATATTTACACAGAAGAGAAGTGCATGCTTTATTGAATAGTTTGGTTGATTGTAATGTACTAAAACATTCCAGAATGAATTTGACTAACATTTGAATTAGCAGCTCATTGGAGCATTTTAACACCCCTACTAAAGAGTTCTGACTTTCACACAACTGGGTGGTAGTGAGGGTTATCTATTGcacatatctgtgtgtgtgcggttttatgtgtgtatgtatgtgtgtgtgtgttttcagggtATGAGTTAGTCACAGGCACTCACCTCCTCCGGCCTGACCTTACTGTACAGTTGGCTCAAGGGGGCCTGGGAGCCGGCTAAGCTCAGATTAGGGCGCTGGGGCCAATGCCATTACTGCTGAAGGGGAAAACCGAAAGCTAGGTCGCAGGCTGGACAGCAAGTCAAATTAAGGAAGACGGCTCCAGTAACATGCTGGCTGCTTCCACATCCTCTTTTCTCTGtatgataaataataattcCTTATTCCAGAGAAGGTAAAGAATGCTGGACTTTCCTGCAGCCAAGGAGATTCCAACTTACCACAAGAGTCGCAATCAGAACCTGTTTTAACTGCCAAATTTCAGACTCTTATCTGTCTATGAATGTTTCCAACTAAGACAACATTGTAAATTCACTTGGCTAATAAAAGGGCATTGGGTTTTTATATACACAGAtcagtaaaaacaataaaactgctGCCAATGGCACATGTTAAGGGTGAAATCTACACCTTAGACAGATAGTGCTTGAACAGTCAGTGCTTAAAGTTGGAAGTAGGACTTTTTGGAAGCAAGAAAAATGGCCAAGATTACCAATCTAGAGTACTTTGACAAGAACCAATCTGTGATGGCTACACAACAGGACATCAAAACTACTCTAAAACCCTCAGACAGGTCTTGTGTGGTTTTTCTGAAATGCATCGATCTGTACCTAAGAAAAGAAGGACAACTGCTTTAAAGTAGGACAACTGGTTAATTGGCATCAGGGTCAAGGGCACCCAAGGCTCATTGATGAGATCCATGGAGGCcttacctcacaacttacaagACTTAAAGGATCTGCCGCTTAGGTCTTAGTGCCAGAAACCTTCAGAGAATTTAGGGGTCTTGAGGAGTCCATGCTTCGACATGTTAGAGCTGTTTTGGTAGCATAAAAGGGAAGAGCACATTATTATTGTTTGGCTGATTGAGGTATATATATTGGTTTAGTTTCTGTTTCTTACctgttatttttgtgttatttacaTTGATTGGTATCGTTATCGTTAGATATGGTATCATTAGGATAGTGTGGGTTCAATCACAGGAAAGTCCAAAATTATAATTGGTAATGATCAGCAGTATTTTTCAAAATGCTGACAAAACTGCAGGTCAACAATTCCAGCCTATTACTGTCAAATTATTTATCAGTCACTGAACCAAAAGAATCTTAGTAATAATACTATTACTTGGCTTAGCAGAGATAGCACTAATAATAACTCTGTCAGAGctgtgtttataaattatttgaagATGTTAAAAGACTCCACTGCAATGTTCTTAAGGTTCTTTTGCCCCCTGTATGACGTCACAGCCCACTTCAGCTTTCTAATCTGGCAGGCTCAGATGTCAGCAGAGTGACCCGTGCGTGTGTGTGATCAGCCCTGCGATTGAGAGTTCGACCCGCAGCGTTCTTGCACCTTTAAAcacttctcttttatttttctactgATTCCTCTATTTTTGTACATATCTGCTTAATGCTGAGGTCACCCCTCTGATCTCTGTTTCTAATGCTGTGAAGAGTGCGCATGCAAGTGAGCGAGTATTCCATTACTGGAGCTGGTTGTGAAAATGTGTCAGTCTAGCTTTGCCAGGAAgaatgcctgtgtgtgttttgttcttGTACATCCTGGAGTCTCCTCTAAATTAAGATTGTGGGTGACTCAGTATCTTGTAAAGGATCATGTAATTTGAATGACTTTCATTAAATGgtgaaaaaaaca

Function

NR:

description
PREDICTED: protein FAM46A-like

GO: NA

KEGG:

id description
K23033 TENT5A_B, FAM46A_B; terminal nucleotidyltransferase 5A/B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237438.3 True 6765 mRNA 0.45 2 27985090 27997357

Neighbor

gene id symbol gene type direction distance location
ca6 ca6 coding downstream 269902 27697502 ~ 27715188 (-)
spsb1 spsb1,LOC103042472,LOC107716103,LOC107687410,LOC107703063,LOC107591103,LOC107737563 coding downstream 386216 27575090 ~ 27598874 (-)
LOC103043307 phc2,LOC108434472 coding downstream 653547 27262763 ~ 27331543 (-)
vps13d vps13d coding downstream 992681 26923999 ~ 26992409 (-)
rcc2 rcc2 coding downstream 1198174 26774825 ~ 26786916 (-)
tcp1 tcp1,LOC107694622,LOC107669694 coding upstream 45381 28042738 ~ 28054243 (-)
LOC103040800 plekhg1,LOC108275720 coding upstream 88710 28086067 ~ 28139559 (-)
LOC103040172 NA coding upstream 208142 28205499 ~ 28223442 (-)
LOC103038310 NA coding upstream 328672 28326029 ~ 28336877 (-)
cdkl2 LOC108415238 coding upstream 565305 28562662 ~ 28577635 (-)
G135500 NA non-coding downstream 44563 27940272 ~ 27940527 (-)
G135499 NA non-coding downstream 52107 27932705 ~ 27932983 (-)
G135496 NA non-coding downstream 76304 27903246 ~ 27908786 (-)
G135470 NA non-coding downstream 234369 27750217 ~ 27750721 (-)
LOC111194128 NA non-coding downstream 414822 27500038 ~ 27570268 (-)
G135543 NA non-coding upstream 68886 28066243 ~ 28067188 (-)
LOC111194027 NA non-coding upstream 174018 28171375 ~ 28181731 (-)
G135569 NA non-coding upstream 203189 28200546 ~ 28202299 (-)
G135584 NA non-coding upstream 229058 28226415 ~ 28226916 (-)
G135588 NA non-coding upstream 244750 28242107 ~ 28243165 (-)
G135239 NA other downstream 1171512 26812518 ~ 26813578 (-)
G135102 emc1 other downstream 1403348 26580176 ~ 26581742 (-)
G134931 uba1,LOC107737583,LOC107672015,LOC107699604 other downstream 1980156 25987191 ~ 26004934 (-)
LOC111194124 NA other downstream 2057145 25914401 ~ 25927945 (-)
taf13 taf13,LOC107671955 other downstream 2179266 25804077 ~ 25805824 (-)
LOC111194130 NA other upstream 70153 28067510 ~ 28077922 (-)
LOC111188233 NA other upstream 278710 28276067 ~ 28406459 (-)
LOC103032909 pik3ca,zgc:158659,LOC107653898,LOC107571432,LOC105891463,LOC102200943 other upstream 711286 28708643 ~ 28740340 (-)
LOC103037426 NA other upstream 811935 28809292 ~ 28814618 (-)
G135910 NA other upstream 1070534 29067891 ~ 29121671 (-)

Expression


Co-expression Network