XLOC_000076


Basic Information

Item Value
gene id XLOC_000076
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 6665033 ~ 6668339 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000148
CTGTCAGAATATTTACGTGTATTTATCAATGGCTTTGTCTCAAATGGAAACTCAAGTGGGCGGTGTTCAAGCGCTCAAGGCGCGCGCCCGGGCACGGAGACCGTAACTCGGTCCGGAATTCAGCGCAGAGTGATGACAGTCCCAGCGCAGTCACATTTAGACAAGGAATAACTCACTTTCGCCTCTGTCATTTAATCAAGCGATCCAGCTGCAgttgcaaacacaaacacaggcGCAACTTCAGACCATGCGCCCTATGTGAACAGCTGCGCAAAGACGCACAGGCTGAAAGACATTTGACAGCTCGCCAACGGGACATTGGAGTGGACATGTGAAGAAATGGATATGCAGCCTCTTCACACGAACAAAATGCGATCTGACATCCTCATCGCCCTCTTCCTCACCGCTGTGATTGTTCCCCTGTGCACCTCGCAGTCAGGTGAGCGTCCAACTCCCGTGCGTAAAAGTGCTTGTCCATCCTTCATATGTGGCTCGTTGGGTTGCTTTGTGTTCTGGTATGACGTTTTGTTTAGTAAATGTGCGCACATCAGTGGATTCGACATTGTTTGTGTTCTAGATGTGGCGAGCGTTTGTTATCAATACTTCTGTGCCAAACTCCAAGTGCCCAAAATATTTCCGTGGGCAATCCACGATGCTTCATcctttgtgtgtgcgcgcgcttaAGGGTATTTTTCAATCAGAACGTGCCAGTGCATTCGTTAGAGATGTCATTAGGGCTGACTGACATCAGAAATCCATTACTGGGGATAAATCACCATTTGCATCGCCATTGCGCGTTTGCTCGCAGCGTTACGTGCCCGAATACGGGTACGTTTCTGTCcctcctttttttaaaaatgactttgtttCTTGACTGATTACCAATTTTTAGTGTAAATCAGCAGTTTAAGTTGTTTCGTTCCCTCTCCACACGATGGTGGCAGTCAACCAAGAAACAGCAGGGCAGCAGATGCGCGGAGCCGTGCGTTTTTACGCATCTTTCTTCATGATGTGTAAGGACTGCGGGAGCGCGCTGAAGCTCAATTAACTCATTATGTATATTCATGCTCATAATAAAGAGTGTTTGGGTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000148 True 1091 lncRNA 0.48 2 6665033 6668339

Neighbor

gene id symbol gene type direction distance location
XLOC_000075 ube2f coding upstream 910 6646529 ~ 6664123 (+)
XLOC_000074 si:ch211-93g23.2 coding upstream 18677 6640437 ~ 6646356 (+)
XLOC_000072 NA coding upstream 110563 6379878 ~ 6554470 (+)
XLOC_000073 NA coding upstream 261810 6398210 ~ 6403223 (+)
XLOC_000071 hecw2b coding upstream 298967 6357059 ~ 6366066 (+)
XLOC_000077 NA coding downstream 90844 6759183 ~ 6760930 (+)
XLOC_000078 CU302223.1 coding downstream 119351 6787690 ~ 6787804 (+)
XLOC_000079 erbb4a coding downstream 148953 6817292 ~ 6925407 (+)
XLOC_000080 NA coding downstream 288574 6956913 ~ 6990027 (+)
XLOC_000081 CU929161.1 coding downstream 395498 7063837 ~ 7063943 (+)
XLOC_000065 NA non-coding upstream 865941 5795013 ~ 5799092 (+)
XLOC_000064 NA non-coding upstream 936349 5706970 ~ 5728684 (+)
XLOC_000059 NA non-coding upstream 1351438 5311479 ~ 5313595 (+)
XLOC_000082 CABZ01075319.1 non-coding downstream 423934 7092273 ~ 7115914 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000299_03495286_03498691 NA coding CI01000299 null 3494539 ~ 3498729 (+)