rfxap (rfxap)


Basic Information

Item Value
gene id rfxap
gene name rfxap
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 35233840 ~ 35239425 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229754.3
atattatattaaggaGTAGTAAGTCATTCATTTCGCTAGGTGGCAGTGTCGCGAAAAAATAGGGTCCTAGAACTGCGGTCCTGAAACGGCAGTCTCCGGTTCTGCAGCTATGTGAGGGGTGTGCTGTGTTCGAGCTCACTGATTTTATATAAGCCGCACAGGCTAACAGTTAGTTAGCACTTATTTAATGATGATTAAACGCGTGCGTTTTGATTTAACACTGAGAGGACGGGGTGATTTTAATACAGAATGAAATGAACGTACCGTGTGTTCCGCCAGCGTGTCGAGTTCATTTCTATGAGGGTCAggctagctaagctaaagctagctaacgGTGACCAGCCCCCACCCCACAGAGAGCGGGGGGCTCCGGTTCACACGGTCGAGTTTATTTATCTATCGCGCAGTTTTATTaatatagttatttatttattcaccgAAACCCGGTATGAGTGAGTCTGAGGCGACGGCTCCCGCTGCGGGCGGTACCGAAGCTCCGGGCTCTCTCGCGGGCGAGAAGAGCGGCTCGCTGAGCGCCGTCGACACGCTGTACTCCTACGACGCGGATGATCCGGGAGAGGAGAGCGACGCCTTGGACGCGCCGGAGCCGCGAGAGAGCGGAGAGAGCCCCGCAGAGACCATGGAGGACGAGGCGCTGGGCGGAGAGAACGCGCCCAAGAAGTGCGTGTATGTAGGCTGCACGGAGACCACCAAGCAGGTGGCCAAGCAGAGGAAACCGTGGATGTGCAAAAAACACCGCAACAAAATGTACAAAGACAagtacaagaagaagaagagcgaCCAGGCCATGTCCTCCGGAAAAATAGagGAGGGCTCAGAAGAGAGGCCAGTTTCTGTAACTAAACAGCGGCTGGGGACGATGGGTGAACGTCCTGCGAGGCCTTCCCTCATCGAGCAAGTGCTAAACCAAAAGAGGCTGTCTCTGTTACGGAGTCCAGAGGTCATCAGcttcctgcagcagcagcagcgcctgCTGACGACTCAGACTCGAGCTCAGAACCAGCAGGACTACTGACTGCTTTTTTAATGTGACCAGTCCTGTTGATAATACAGGAGGTTTTACAGAACTACACAGCAGCATGCATTTTATACAGAGCTTTTGGTTAAAGAAAACGTGAAGATTATGGACTCTTGACTGATGTGAGACTCTCTGAGGTGGGAATGAACTGAAGAACCCAAggcattatatattattatgacCTGCATCATTTATCATGACAATCATCAGAAGTTGATCTACTGTATCTAAGAACACTCTTTAAACCAGGAGTTTGTCATTTTAGGAGCATTATTAAGAACTGAAGCTTGTATGTACTTGTATGTGATTCTATttgtatatttctttaaaaaactatTATGTAAATAATTTGAAGGCAGATACACTGTAATATTAGCAGTGATGCAACTGCCTTCTTTTAGTTTTACAGACAGGAAAGTTAGGAAAGTCTAGTTACGGACTTTACAGTATTCAATTACAAAATCccacctcacaatttatacagCTGTGGATGTTCCCAAGCTATCCCCTGAGATAACTTCATTACTTTCAGTTTACATGATGCTGTCCACTGTCTTGACATGTGAGTGTAATGtaagttatttttataaatcCATTAAAAGCATAATGGTTgcactttcattttttaaaatgagctATTTACCCTGTGCCATACAAAAGCATGATGGGTACTACTATGGTGGTCCTTGAGCgacattttaatatatacaatCTTATGCATGAATGATTTGATAAAATCTTTTGGGAAGGCCCTGCTGCaaagtttttattaaatataattattgatATGATTTTGAATGTGTTGCATATTTTATGCGCATATATTACTATGTTGCATacttatagtgtttttttttttttacattcgtGCATTAGGTCTCAAGACGACACATGATTTACAGGGAAATTCTGTATTTGACAAAATGacaaataacaaacacaaaaaacatacaagCTTACATTGATACTACTGATGCTCCACCTTTCTATTTTCTTTCCTTgactttctatttgtttttctgaaatgtACAGAATTGCTAAGTGGAAGGAGTGTGAAATGGtgatttttgattaaaaaaaagaaaaaaaaggaaatgaaaa

Function

symbol description
rfxap Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in MHC class II deficiency. Orthologous to human RFXAP (regulatory factor X associated protein).

NR:

description
PREDICTED: regulatory factor X-associated protein

GO: NA

KEGG:

id description
K08063 RFXAP; regulatory factor X-associated protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229754.3 True 2140 mRNA 0.43 3 35233840 35239425

Neighbor

gene id symbol gene type direction distance location
sertm1 sertm1 coding upstream 892 35222688 ~ 35232948 (+)
nbea nbeaa,nbea,LOC107691681 coding upstream 163517 34775714 ~ 35070323 (+)
stard13 stard13,LOC108415386 coding upstream 507119 34545763 ~ 34726721 (+)
LOC103024324 kl coding upstream 703147 34513238 ~ 34530693 (+)
LOC103026520 LOC108423747 coding upstream 1110169 34008921 ~ 34123671 (+)
exosc8 exosc8,LOC107577834,LOC107697412 coding downstream 31533 35270958 ~ 35276627 (+)
LOC111195094 NA coding downstream 120308 35359733 ~ 35363752 (+)
styxl1 NA coding downstream 249177 35488602 ~ 35495295 (+)
LOC103023179 tmem120a,LOC108276692,LOC107728827,LOC107579123 coding downstream 258901 35498326 ~ 35504763 (+)
LOC103023494 LOC107577900,LOC108442441 coding downstream 278746 35518171 ~ 35541791 (+)
G181331 NA non-coding upstream 1822 35201816 ~ 35232018 (+)
G181332 ccna1 non-coding upstream 22941 35205152 ~ 35210899 (+)
G181328 NA non-coding upstream 40295 35192436 ~ 35193545 (+)
G181200 NA non-coding upstream 140648 35092304 ~ 35093192 (+)
G181199 NA non-coding upstream 141901 35089319 ~ 35091939 (+)
G181345 alg5,LOC102793295 non-coding downstream 15509 35254934 ~ 35269283 (+)
G181351 NA non-coding downstream 44125 35283550 ~ 35316327 (+)
G181372 NA non-coding downstream 85485 35324910 ~ 35325164 (+)
G181390 NA non-coding downstream 169155 35408580 ~ 35410364 (+)
G181408 NA non-coding downstream 231280 35470705 ~ 35471932 (+)
LOC103024954 LOC108423745 other upstream 726516 34334576 ~ 34507324 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other upstream 904870 34172924 ~ 34328970 (+)
ufm1 ufm1,LOC107701138 other upstream 2165908 33050242 ~ 33067932 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other upstream 2960042 32264998 ~ 32273798 (+)
G180266 NA other upstream 3799931 31433198 ~ 31433909 (+)
nsun5 nsun5,LOC102793237,LOC107686168 other downstream 153096 35392521 ~ 35403624 (+)
LOC107197592 NA other downstream 361058 35600483 ~ 35607593 (+)
LOC103044041 NA other downstream 445579 35685004 ~ 35702995 (+)
LOC103024766 zdhhc20a,LOC107589301,LOC107743391,LOC107686182,LOC107728865,LOC107697429,LOC108411113,LOC108276908 other downstream 576610 35816035 ~ 35842871 (+)
G181734 NA other downstream 967142 36206567 ~ 36209854 (+)

Expression


Co-expression Network