LOC111195040


Basic Information

Item Value
gene id LOC111195040
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 12214700 ~ 12217838 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651432.1
TCAAGTCACGCCCCGCCCCGCCCCGCCCCGCCCTGGACGCCGACCGCACCATTTCCCTCCCGCTGGAAGAGGCTCCTGTGGGAagtaaatggctgaaataaatatttCTGTTAGATTTTCCTGTTCCATGGATTCATTTGTGAAGGAGAAATTACATGAGTGGAAACTGGACTCTCTGATTCCTAGGTCTGAGTatgaagaaatgaaaaaggaGTTTTCTTTTACTGGACGATGCTTCCATTGTGGCGCTAGTTCCTGTGATTGGTCCCAGACTGAAACTGAGGTGACACCTCAGAAAACTGAATGAGatgCGCAAGGTGAAGAGGATAGAAGAGCTTCCGTCCGAGCtacaaagagacaaaaaaataataatttattgatcTGCAACCAGTTGGGACCATTATGGGGAGTTCCTGTCCGAGGCACAAGTCACAAGACCATACCCATTTGTTTTGGCTCTAGGAGATGATCGGCACTGCTCGCAATCCTTTGTGGTCATCAACAGGGAAAAGAAATGTTGTTGAGGAATGTTTATGAAATGGAAATGAAATGGTTGTTGTTGATGACTGTTGTTAAGAAATTACTTTGAGAAATTATCATGAGATGTACTTATTCAATAAAGCATTTTATTGTTGGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651432.1 True 638 lncRNA 0.43 6 12214700 12217838

Neighbor

gene id symbol gene type direction distance location
cnih2 cnih2,LOC100706298 coding upstream 63650 12144051 ~ 12151050 (+)
LOC111195107 NA coding upstream 119411 12090628 ~ 12095289 (+)
LOC107197312 NA coding upstream 221476 11988169 ~ 11993224 (+)
LOC111195033 NA coding upstream 275603 11935660 ~ 11939097 (+)
LOC103027020 nlgn2b,LOC108443341,LOC107678031,LOC107554306,LOC107720555,LOC101475673,LOC102787387 coding upstream 348784 11750213 ~ 11865916 (+)
LOC111195108 NA coding downstream 96894 12314732 ~ 12316734 (+)
ptrh2 ptrh2,LOC107744620,LOC107548881,LOC107699263,LOC107693958,LOC107747021,LOC107576753 coding downstream 456040 12673878 ~ 12692133 (+)
LOC103039534 hmgb1a,LOC100304841,LOC108439208,LOC107653759,LOC107583338,LOC107578084 coding downstream 573385 12791223 ~ 12794193 (+)
katnal1 katnal1,LOC107741157,LOC107653760,LOC107578067,LOC107697436,LOC107743395 coding downstream 578278 12796116 ~ 12809169 (+)
ubl3 ubl3,LOC107741158 coding downstream 618892 12836730 ~ 12870232 (+)
LOC111195036 NA non-coding upstream 25319 12187243 ~ 12189381 (+)
G175201 NA non-coding upstream 145378 12065278 ~ 12069322 (+)
G175169 NA non-coding upstream 176889 11983263 ~ 12037811 (+)
G175160 NA non-coding upstream 264931 11948808 ~ 11949769 (+)
G175157 NA non-coding upstream 268805 11945397 ~ 11945895 (+)
G175237 NA non-coding downstream 1408 12219246 ~ 12219689 (+)
G175249 ints2,LOC107744627,LOC107747027,LOC107693886,LOC107699256,LOC107578473 non-coding downstream 38756 12256594 ~ 12260820 (+)
G175250 ints2,LOC107744627,LOC107699256 non-coding downstream 78954 12296792 ~ 12297319 (+)
G175272 NA non-coding downstream 102112 12319950 ~ 12326872 (+)
G175277 NA non-coding downstream 120975 12338813 ~ 12365939 (+)
LOC103027177 tmem261,LOC103027177 other upstream 5251 12191356 ~ 12209449 (+)
G175108 NA other upstream 301244 11908872 ~ 11913456 (+)
G174994 NA other upstream 778170 11429871 ~ 11436530 (+)
G174874 LOC108437803 other upstream 1195282 10832168 ~ 11019418 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other upstream 1582935 10621028 ~ 10631765 (+)
rnft1 rnft1 other downstream 306303 12524141 ~ 12540201 (+)
G175379 cltc,LOC108250671,LOC106581108,LOC107693955,LOC106612978 other downstream 521665 12739503 ~ 12745053 (+)
LOC103028411 LOC108444524,LOC107720618,LOC559907,LOC108276802 other downstream 1075460 13293298 ~ 13329018 (+)
LOC111195048 fgf13b,LOC108444526,LOC107555168,LOC107718748,LOC107548853,LOC107720625,LOC107693932 other downstream 1135930 13353768 ~ 13418416 (+)
G175900 NA other downstream 1461521 13679359 ~ 13685563 (+)

Expression


Co-expression Network